Experiment: MoLS4 with L-Aspartic as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2303 and DVU2305 are separated by 327 nucleotides DVU2305 and DVU2306 overlap by 8 nucleotides DVU2306 and DVU2307 are separated by 97 nucleotides DVU2307 and DVU2308 are separated by 11 nucleotides
DVU2303: DVU2303 - conserved domain protein (TIGR), at 2,396,735 to 2,398,162
DVU2303
DVU2305: DVU2305 - conserved hypothetical protein (TIGR), at 2,398,490 to 2,399,119
DVU2305
DVU2306: DVU2306 - phosphate transporter family protein (TIGR), at 2,399,112 to 2,400,122
DVU2306
DVU2307: DVU2307 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 2,400,220 to 2,400,441
DVU2307
DVU2308: DVU2308 - conserved hypothetical protein TIGR00022 (TIGR), at 2,400,453 to 2,400,944
DVU2308
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2398.168 kb on + strand at 2398.264 kb on - strand at 2398.276 kb on - strand at 2398.378 kb on - strand at 2398.385 kb on + strand at 2398.720 kb on + strand, within DVU2305 at 2398.729 kb on + strand, within DVU2305 at 2398.737 kb on - strand, within DVU2305 at 2398.848 kb on - strand, within DVU2305 at 2399.112 kb on - strand at 2399.181 kb on + strand at 2399.193 kb on + strand at 2399.248 kb on - strand, within DVU2306 at 2399.348 kb on - strand, within DVU2306 at 2399.348 kb on - strand, within DVU2306 at 2399.348 kb on - strand, within DVU2306 at 2399.416 kb on - strand, within DVU2306 at 2399.456 kb on + strand, within DVU2306 at 2399.461 kb on - strand, within DVU2306 at 2399.481 kb on + strand, within DVU2306 at 2399.484 kb on - strand, within DVU2306 at 2399.800 kb on - strand, within DVU2306 at 2400.254 kb on + strand, within DVU2307 at 2400.259 kb on + strand, within DVU2307 at 2400.307 kb on - strand, within DVU2307 at 2400.307 kb on - strand, within DVU2307 at 2400.353 kb on - strand, within DVU2307 at 2400.377 kb on + strand, within DVU2307 at 2400.385 kb on - strand, within DVU2307 at 2400.459 kb on + strand at 2400.467 kb on - strand at 2400.504 kb on - strand, within DVU2308 at 2400.533 kb on + strand, within DVU2308 at 2400.554 kb on + strand, within DVU2308 at 2400.612 kb on + strand, within DVU2308 at 2400.634 kb on + strand, within DVU2308 at 2400.750 kb on + strand, within DVU2308 at 2400.750 kb on + strand, within DVU2308
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Aspartic as nutrient 10mM remove 2,398,168 + +0.2 2,398,264 - -0.4 2,398,276 - +0.5 2,398,378 - +0.2 2,398,385 + +2.5 2,398,720 + DVU2305 0.37 -0.8 2,398,729 + DVU2305 0.38 -1.4 2,398,737 - DVU2305 0.39 -3.5 2,398,848 - DVU2305 0.57 +2.5 2,399,112 - -0.5 2,399,181 + +0.9 2,399,193 + -0.4 2,399,248 - DVU2306 0.13 -0.8 2,399,348 - DVU2306 0.23 -1.1 2,399,348 - DVU2306 0.23 -0.4 2,399,348 - DVU2306 0.23 -0.2 2,399,416 - DVU2306 0.30 -0.2 2,399,456 + DVU2306 0.34 +2.5 2,399,461 - DVU2306 0.35 -1.2 2,399,481 + DVU2306 0.36 +0.3 2,399,484 - DVU2306 0.37 -0.4 2,399,800 - DVU2306 0.68 -0.7 2,400,254 + DVU2307 0.15 -1.0 2,400,259 + DVU2307 0.18 -0.5 2,400,307 - DVU2307 0.39 +0.0 2,400,307 - DVU2307 0.39 +3.5 2,400,353 - DVU2307 0.60 -0.3 2,400,377 + DVU2307 0.71 -0.2 2,400,385 - DVU2307 0.74 -0.7 2,400,459 + -0.2 2,400,467 - +0.5 2,400,504 - DVU2308 0.10 -0.2 2,400,533 + DVU2308 0.16 -0.2 2,400,554 + DVU2308 0.21 -0.1 2,400,612 + DVU2308 0.32 -0.1 2,400,634 + DVU2308 0.37 -0.5 2,400,750 + DVU2308 0.60 -0.3 2,400,750 + DVU2308 0.60 +1.0
Or see this region's nucleotide sequence