Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2306

Experiment: MoLS4 with L-Aspartic as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2303 and DVU2305 are separated by 327 nucleotidesDVU2305 and DVU2306 overlap by 8 nucleotidesDVU2306 and DVU2307 are separated by 97 nucleotidesDVU2307 and DVU2308 are separated by 11 nucleotides DVU2303: DVU2303 - conserved domain protein (TIGR), at 2,396,735 to 2,398,162 DVU2303 DVU2305: DVU2305 - conserved hypothetical protein (TIGR), at 2,398,490 to 2,399,119 DVU2305 DVU2306: DVU2306 - phosphate transporter family protein (TIGR), at 2,399,112 to 2,400,122 DVU2306 DVU2307: DVU2307 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 2,400,220 to 2,400,441 DVU2307 DVU2308: DVU2308 - conserved hypothetical protein TIGR00022 (TIGR), at 2,400,453 to 2,400,944 DVU2308 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2398.168 kb on + strandat 2398.264 kb on - strandat 2398.276 kb on - strandat 2398.378 kb on - strandat 2398.385 kb on + strandat 2398.720 kb on + strand, within DVU2305at 2398.729 kb on + strand, within DVU2305at 2398.737 kb on - strand, within DVU2305at 2398.848 kb on - strand, within DVU2305at 2399.112 kb on - strandat 2399.181 kb on + strandat 2399.193 kb on + strandat 2399.248 kb on - strand, within DVU2306at 2399.348 kb on - strand, within DVU2306at 2399.348 kb on - strand, within DVU2306at 2399.348 kb on - strand, within DVU2306at 2399.416 kb on - strand, within DVU2306at 2399.456 kb on + strand, within DVU2306at 2399.461 kb on - strand, within DVU2306at 2399.481 kb on + strand, within DVU2306at 2399.484 kb on - strand, within DVU2306at 2399.800 kb on - strand, within DVU2306at 2400.254 kb on + strand, within DVU2307at 2400.259 kb on + strand, within DVU2307at 2400.307 kb on - strand, within DVU2307at 2400.307 kb on - strand, within DVU2307at 2400.353 kb on - strand, within DVU2307at 2400.377 kb on + strand, within DVU2307at 2400.385 kb on - strand, within DVU2307at 2400.459 kb on + strandat 2400.467 kb on - strandat 2400.504 kb on - strand, within DVU2308at 2400.533 kb on + strand, within DVU2308at 2400.554 kb on + strand, within DVU2308at 2400.612 kb on + strand, within DVU2308at 2400.634 kb on + strand, within DVU2308at 2400.750 kb on + strand, within DVU2308at 2400.750 kb on + strand, within DVU2308

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Aspartic as nutrient 10mM
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2,398,168 + +0.2
2,398,264 - -0.4
2,398,276 - +0.5
2,398,378 - +0.2
2,398,385 + +2.5
2,398,720 + DVU2305 0.37 -0.8
2,398,729 + DVU2305 0.38 -1.4
2,398,737 - DVU2305 0.39 -3.5
2,398,848 - DVU2305 0.57 +2.5
2,399,112 - -0.5
2,399,181 + +0.9
2,399,193 + -0.4
2,399,248 - DVU2306 0.13 -0.8
2,399,348 - DVU2306 0.23 -1.1
2,399,348 - DVU2306 0.23 -0.4
2,399,348 - DVU2306 0.23 -0.2
2,399,416 - DVU2306 0.30 -0.2
2,399,456 + DVU2306 0.34 +2.5
2,399,461 - DVU2306 0.35 -1.2
2,399,481 + DVU2306 0.36 +0.3
2,399,484 - DVU2306 0.37 -0.4
2,399,800 - DVU2306 0.68 -0.7
2,400,254 + DVU2307 0.15 -1.0
2,400,259 + DVU2307 0.18 -0.5
2,400,307 - DVU2307 0.39 +0.0
2,400,307 - DVU2307 0.39 +3.5
2,400,353 - DVU2307 0.60 -0.3
2,400,377 + DVU2307 0.71 -0.2
2,400,385 - DVU2307 0.74 -0.7
2,400,459 + -0.2
2,400,467 - +0.5
2,400,504 - DVU2308 0.10 -0.2
2,400,533 + DVU2308 0.16 -0.2
2,400,554 + DVU2308 0.21 -0.1
2,400,612 + DVU2308 0.32 -0.1
2,400,634 + DVU2308 0.37 -0.5
2,400,750 + DVU2308 0.60 -0.3
2,400,750 + DVU2308 0.60 +1.0

Or see this region's nucleotide sequence