Experiment: MoLS4 with L-Aspartic as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0722 and purT are separated by 116 nucleotides purT and DVU0724 are separated by 226 nucleotides
DVU0722: DVU0722 - response regulator (TIGR), at 803,442 to 804,998
DVU0722
DVU0723: purT - phosphoribosylglycinamide formyltransferase 2 (TIGR), at 805,115 to 806,296
purT
DVU0724: DVU0724 - sodium/alanine symporter family protein (TIGR), at 806,523 to 807,929
DVU0724
Position (kb) 805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2 at 804.126 kb on - strand, within DVU0722 at 804.133 kb on + strand, within DVU0722 at 804.257 kb on - strand, within DVU0722 at 804.257 kb on - strand, within DVU0722 at 804.550 kb on + strand, within DVU0722 at 804.595 kb on - strand, within DVU0722 at 804.602 kb on + strand, within DVU0722 at 804.602 kb on + strand, within DVU0722 at 804.603 kb on - strand, within DVU0722 at 804.731 kb on - strand, within DVU0722 at 805.035 kb on - strand at 805.066 kb on + strand at 805.100 kb on - strand at 805.123 kb on + strand at 805.140 kb on + strand at 805.160 kb on - strand at 805.289 kb on - strand, within purT at 805.350 kb on - strand, within purT at 805.464 kb on - strand, within purT at 805.567 kb on - strand, within purT at 805.567 kb on - strand, within purT at 805.604 kb on + strand, within purT at 805.612 kb on - strand, within purT at 805.612 kb on - strand, within purT at 805.656 kb on - strand, within purT at 805.772 kb on - strand, within purT at 805.929 kb on + strand, within purT at 805.937 kb on + strand, within purT at 805.966 kb on + strand, within purT at 806.155 kb on + strand, within purT at 806.217 kb on + strand at 806.283 kb on + strand at 806.360 kb on - strand at 806.535 kb on - strand at 806.665 kb on - strand, within DVU0724 at 806.773 kb on - strand, within DVU0724 at 806.817 kb on - strand, within DVU0724 at 806.909 kb on + strand, within DVU0724 at 806.919 kb on - strand, within DVU0724 at 806.924 kb on - strand, within DVU0724 at 807.115 kb on - strand, within DVU0724 at 807.139 kb on + strand, within DVU0724 at 807.185 kb on + strand, within DVU0724 at 807.193 kb on - strand, within DVU0724 at 807.217 kb on - strand, within DVU0724 at 807.268 kb on + strand, within DVU0724 at 807.280 kb on + strand, within DVU0724
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Aspartic as nutrient 10mM remove 804,126 - DVU0722 0.44 +1.1 804,133 + DVU0722 0.44 -0.0 804,257 - DVU0722 0.52 +0.1 804,257 - DVU0722 0.52 -0.7 804,550 + DVU0722 0.71 -0.2 804,595 - DVU0722 0.74 +2.3 804,602 + DVU0722 0.75 +1.1 804,602 + DVU0722 0.75 -0.6 804,603 - DVU0722 0.75 -0.0 804,731 - DVU0722 0.83 -1.6 805,035 - -0.1 805,066 + -2.0 805,100 - +0.6 805,123 + -0.3 805,140 + -0.2 805,160 - -0.3 805,289 - purT DVU0723 0.15 +2.5 805,350 - purT DVU0723 0.20 -0.4 805,464 - purT DVU0723 0.30 -0.7 805,567 - purT DVU0723 0.38 -1.3 805,567 - purT DVU0723 0.38 +0.0 805,604 + purT DVU0723 0.41 -0.4 805,612 - purT DVU0723 0.42 -0.8 805,612 - purT DVU0723 0.42 +1.2 805,656 - purT DVU0723 0.46 -0.6 805,772 - purT DVU0723 0.56 -0.4 805,929 + purT DVU0723 0.69 -1.1 805,937 + purT DVU0723 0.70 -1.0 805,966 + purT DVU0723 0.72 -0.6 806,155 + purT DVU0723 0.88 -0.2 806,217 + -1.3 806,283 + -0.0 806,360 - -0.5 806,535 - -0.5 806,665 - DVU0724 0.10 -0.2 806,773 - DVU0724 0.18 -0.3 806,817 - DVU0724 0.21 -0.1 806,909 + DVU0724 0.27 -1.7 806,919 - DVU0724 0.28 -0.2 806,924 - DVU0724 0.29 +2.5 807,115 - DVU0724 0.42 -1.2 807,139 + DVU0724 0.44 -0.3 807,185 + DVU0724 0.47 -0.3 807,193 - DVU0724 0.48 +1.5 807,217 - DVU0724 0.49 -1.2 807,268 + DVU0724 0.53 -0.5 807,280 + DVU0724 0.54 +0.4
Or see this region's nucleotide sequence