Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000844 and ABIE53_000845 are separated by 193 nucleotides ABIE53_000845 and ABIE53_000846 are separated by 690 nucleotides
ABIE53_000844: ABIE53_000844 - glycolate oxidase, at 914,618 to 916,111
_000844
ABIE53_000845: ABIE53_000845 - D-lactate dehydrogenase (cytochrome), at 916,305 to 917,720
_000845
ABIE53_000846: ABIE53_000846 - cob(I)alamin adenosyltransferase, at 918,411 to 918,965
_000846
Position (kb) 916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 915.603 kb on + strand, within ABIE53_000844 at 915.603 kb on + strand, within ABIE53_000844 at 915.603 kb on + strand, within ABIE53_000844 at 915.603 kb on + strand, within ABIE53_000844 at 915.604 kb on - strand, within ABIE53_000844 at 915.604 kb on - strand, within ABIE53_000844 at 915.604 kb on - strand, within ABIE53_000844 at 915.687 kb on + strand, within ABIE53_000844 at 915.687 kb on + strand, within ABIE53_000844 at 915.687 kb on + strand, within ABIE53_000844 at 915.690 kb on + strand, within ABIE53_000844 at 915.690 kb on + strand, within ABIE53_000844 at 915.690 kb on + strand, within ABIE53_000844 at 915.690 kb on + strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.691 kb on - strand, within ABIE53_000844 at 915.700 kb on - strand, within ABIE53_000844 at 915.765 kb on + strand, within ABIE53_000844 at 915.766 kb on - strand, within ABIE53_000844 at 915.964 kb on - strand at 915.988 kb on - strand at 915.988 kb on - strand at 915.988 kb on - strand at 915.997 kb on + strand at 915.997 kb on + strand at 915.997 kb on + strand at 915.997 kb on + strand at 915.997 kb on + strand at 915.997 kb on + strand at 915.998 kb on - strand at 915.998 kb on - strand at 915.998 kb on - strand at 915.998 kb on - strand at 916.012 kb on - strand at 916.181 kb on + strand at 916.181 kb on + strand at 916.181 kb on + strand at 916.181 kb on + strand at 916.181 kb on + strand at 916.181 kb on + strand at 916.181 kb on + strand at 916.182 kb on - strand at 916.182 kb on - strand at 916.182 kb on - strand at 916.182 kb on - strand at 916.236 kb on - strand at 916.244 kb on + strand at 916.244 kb on + strand at 916.244 kb on + strand at 916.244 kb on + strand at 916.244 kb on + strand at 916.244 kb on + strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.245 kb on - strand at 916.247 kb on + strand at 916.247 kb on + strand at 916.247 kb on + strand at 916.247 kb on + strand at 916.247 kb on + strand at 916.247 kb on + strand at 916.248 kb on - strand at 916.248 kb on - strand at 916.248 kb on - strand at 916.248 kb on - strand at 916.248 kb on - strand at 916.248 kb on - strand at 916.248 kb on - strand at 916.253 kb on + strand at 916.253 kb on + strand at 916.253 kb on + strand at 916.254 kb on - strand at 916.254 kb on - strand at 916.254 kb on - strand at 916.254 kb on - strand at 916.319 kb on + strand at 916.319 kb on + strand at 916.320 kb on - strand at 916.320 kb on - strand at 916.320 kb on - strand at 916.320 kb on - strand at 916.320 kb on - strand at 916.320 kb on - strand at 916.320 kb on - strand at 916.701 kb on + strand, within ABIE53_000845 at 916.701 kb on + strand, within ABIE53_000845 at 916.702 kb on - strand, within ABIE53_000845 at 916.702 kb on - strand, within ABIE53_000845 at 916.702 kb on - strand, within ABIE53_000845 at 916.702 kb on - strand, within ABIE53_000845 at 916.702 kb on - strand, within ABIE53_000845 at 916.721 kb on - strand, within ABIE53_000845 at 917.054 kb on - strand, within ABIE53_000845 at 917.479 kb on + strand, within ABIE53_000845 at 917.500 kb on + strand, within ABIE53_000845 at 917.500 kb on + strand, within ABIE53_000845 at 917.500 kb on + strand, within ABIE53_000845 at 917.500 kb on + strand, within ABIE53_000845 at 917.500 kb on + strand, within ABIE53_000845 at 917.501 kb on - strand, within ABIE53_000845 at 917.501 kb on - strand, within ABIE53_000845 at 917.501 kb on - strand, within ABIE53_000845 at 917.501 kb on - strand, within ABIE53_000845 at 917.664 kb on + strand at 917.665 kb on - strand at 917.665 kb on - strand at 917.665 kb on - strand at 917.665 kb on - strand at 917.713 kb on + strand at 917.713 kb on + strand at 917.713 kb on + strand at 917.713 kb on + strand at 917.713 kb on + strand at 917.713 kb on + strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.714 kb on - strand at 917.746 kb on + strand at 917.746 kb on + strand at 917.746 kb on + strand at 917.746 kb on + strand at 917.746 kb on + strand at 917.746 kb on + strand at 917.747 kb on - strand at 917.747 kb on - strand at 917.747 kb on - strand at 917.761 kb on + strand at 917.761 kb on + strand at 917.761 kb on + strand at 917.761 kb on + strand at 917.761 kb on + strand at 917.761 kb on + strand at 917.762 kb on - strand at 917.778 kb on - strand at 917.795 kb on - strand at 917.795 kb on - strand at 917.795 kb on - strand at 917.795 kb on - strand at 917.809 kb on + strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.810 kb on - strand at 917.843 kb on - strand at 917.843 kb on - strand at 917.858 kb on - strand at 917.858 kb on - strand at 917.858 kb on - strand at 917.858 kb on - strand at 917.873 kb on + strand at 917.873 kb on + strand at 917.890 kb on + strand at 917.905 kb on + strand at 917.905 kb on + strand at 917.922 kb on - strand at 917.922 kb on - strand at 917.922 kb on - strand at 917.939 kb on - strand at 917.939 kb on - strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.001 kb on + strand at 918.018 kb on - strand at 918.018 kb on - strand at 918.042 kb on + strand at 918.043 kb on - strand at 918.049 kb on + strand at 918.049 kb on + strand at 918.049 kb on + strand at 918.050 kb on - strand at 918.066 kb on - strand at 918.122 kb on - strand at 918.122 kb on - strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.241 kb on + strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.242 kb on - strand at 918.243 kb on + strand at 918.243 kb on + strand at 918.244 kb on - strand at 918.244 kb on - strand at 918.244 kb on - strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.272 kb on + strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.273 kb on - strand at 918.286 kb on + strand at 918.287 kb on - strand at 918.301 kb on + strand at 918.345 kb on - strand at 918.345 kb on - strand at 918.424 kb on + strand at 918.488 kb on - strand, within ABIE53_000846 at 918.705 kb on + strand, within ABIE53_000846 at 918.705 kb on + strand, within ABIE53_000846 at 918.705 kb on + strand, within ABIE53_000846 at 918.706 kb on - strand, within ABIE53_000846 at 918.706 kb on - strand, within ABIE53_000846 at 918.706 kb on - strand, within ABIE53_000846
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 915,603 + ABIE53_000844 0.66 +0.6 915,603 + ABIE53_000844 0.66 -0.8 915,603 + ABIE53_000844 0.66 -1.8 915,603 + ABIE53_000844 0.66 -1.5 915,604 - ABIE53_000844 0.66 -0.0 915,604 - ABIE53_000844 0.66 -1.4 915,604 - ABIE53_000844 0.66 -0.8 915,687 + ABIE53_000844 0.72 -0.9 915,687 + ABIE53_000844 0.72 -1.1 915,687 + ABIE53_000844 0.72 -1.0 915,690 + ABIE53_000844 0.72 -1.0 915,690 + ABIE53_000844 0.72 -2.1 915,690 + ABIE53_000844 0.72 +1.6 915,690 + ABIE53_000844 0.72 -1.0 915,691 - ABIE53_000844 0.72 -1.5 915,691 - ABIE53_000844 0.72 -1.8 915,691 - ABIE53_000844 0.72 -1.0 915,691 - ABIE53_000844 0.72 +0.1 915,691 - ABIE53_000844 0.72 -1.0 915,691 - ABIE53_000844 0.72 -0.8 915,691 - ABIE53_000844 0.72 -0.9 915,691 - ABIE53_000844 0.72 -1.9 915,691 - ABIE53_000844 0.72 +1.6 915,700 - ABIE53_000844 0.72 -2.4 915,765 + ABIE53_000844 0.77 -1.8 915,766 - ABIE53_000844 0.77 +1.1 915,964 - -1.5 915,988 - -0.5 915,988 - -1.5 915,988 - -1.9 915,997 + -0.9 915,997 + -1.2 915,997 + +1.6 915,997 + -1.9 915,997 + -0.2 915,997 + +1.6 915,998 - -0.7 915,998 - -1.1 915,998 - +1.6 915,998 - -0.6 916,012 - +0.1 916,181 + -0.8 916,181 + -0.4 916,181 + -0.6 916,181 + +0.9 916,181 + +1.6 916,181 + -0.0 916,181 + -0.9 916,182 - -0.2 916,182 - -0.0 916,182 - +0.1 916,182 - +2.6 916,236 - -0.4 916,244 + -0.0 916,244 + -1.0 916,244 + -0.4 916,244 + -0.3 916,244 + +2.1 916,244 + -0.8 916,245 - +0.3 916,245 - -1.2 916,245 - +0.6 916,245 - -1.3 916,245 - +2.6 916,245 - +1.1 916,245 - +0.3 916,245 - -0.2 916,245 - -0.0 916,245 - -0.8 916,245 - +0.4 916,245 - +1.6 916,247 + +0.6 916,247 + -2.1 916,247 + -0.4 916,247 + -0.0 916,247 + -1.2 916,247 + -1.3 916,248 - +1.6 916,248 - -0.0 916,248 - +0.6 916,248 - -0.4 916,248 - +1.6 916,248 - -0.4 916,248 - -0.4 916,253 + +0.2 916,253 + -1.2 916,253 + -0.8 916,254 - -0.0 916,254 - +0.6 916,254 - -0.4 916,254 - -0.4 916,319 + -0.2 916,319 + -0.7 916,320 - -1.3 916,320 - -0.4 916,320 - +1.6 916,320 - +0.4 916,320 - +0.6 916,320 - +0.8 916,320 - +0.4 916,701 + ABIE53_000845 0.28 -1.2 916,701 + ABIE53_000845 0.28 -0.1 916,702 - ABIE53_000845 0.28 +0.1 916,702 - ABIE53_000845 0.28 +1.2 916,702 - ABIE53_000845 0.28 +2.1 916,702 - ABIE53_000845 0.28 +1.6 916,702 - ABIE53_000845 0.28 +0.6 916,721 - ABIE53_000845 0.29 +1.6 917,054 - ABIE53_000845 0.53 -2.2 917,479 + ABIE53_000845 0.83 -1.0 917,500 + ABIE53_000845 0.84 -0.8 917,500 + ABIE53_000845 0.84 +1.0 917,500 + ABIE53_000845 0.84 +0.6 917,500 + ABIE53_000845 0.84 -0.2 917,500 + ABIE53_000845 0.84 -0.0 917,501 - ABIE53_000845 0.84 -0.8 917,501 - ABIE53_000845 0.84 -0.8 917,501 - ABIE53_000845 0.84 -0.1 917,501 - ABIE53_000845 0.84 +0.1 917,664 + -0.2 917,665 - -0.0 917,665 - -0.6 917,665 - -0.0 917,665 - +0.6 917,713 + -0.9 917,713 + -0.8 917,713 + -1.1 917,713 + -1.2 917,713 + -1.0 917,713 + -0.7 917,714 - -0.2 917,714 - +0.2 917,714 - -1.2 917,714 - -0.3 917,714 - -0.0 917,714 - -0.9 917,714 - -0.6 917,714 - -0.1 917,714 - +0.1 917,714 - -0.1 917,714 - -0.0 917,746 + -0.9 917,746 + -1.0 917,746 + +0.1 917,746 + -1.2 917,746 + +2.1 917,746 + -1.1 917,747 - -1.8 917,747 - -0.3 917,747 - +2.6 917,761 + +1.6 917,761 + +0.4 917,761 + +0.3 917,761 + +0.2 917,761 + -1.0 917,761 + -0.0 917,762 - +2.0 917,778 - -0.7 917,795 - -0.8 917,795 - -0.4 917,795 - +0.5 917,795 - -0.4 917,809 + +2.6 917,810 - +0.6 917,810 - +0.2 917,810 - -0.4 917,810 - -0.8 917,810 - -0.3 917,810 - -0.0 917,810 - +3.1 917,810 - -0.3 917,810 - -0.4 917,810 - -0.2 917,810 - -0.6 917,810 - -0.7 917,810 - +0.8 917,810 - -0.2 917,843 - -0.1 917,843 - +1.1 917,858 - +0.8 917,858 - -0.3 917,858 - +1.8 917,858 - +2.1 917,873 + -1.8 917,873 + -0.2 917,890 + -1.2 917,905 + -1.2 917,905 + -0.8 917,922 - +0.5 917,922 - -0.4 917,922 - -1.4 917,939 - +1.0 917,939 - -0.0 918,001 + -0.2 918,001 + -0.8 918,001 + +0.6 918,001 + +0.7 918,001 + +0.3 918,001 + -0.4 918,001 + -0.7 918,001 + -1.9 918,001 + -1.2 918,001 + -1.2 918,018 - +1.8 918,018 - -0.0 918,042 + +1.6 918,043 - +1.0 918,049 + +1.6 918,049 + -0.7 918,049 + +1.6 918,050 - -0.4 918,066 - +1.2 918,122 - -0.8 918,122 - +2.4 918,241 + +3.1 918,241 + -0.1 918,241 + -1.0 918,241 + -1.2 918,241 + +0.2 918,241 + +0.8 918,241 + +2.6 918,242 - -1.2 918,242 - +1.6 918,242 - -0.0 918,242 - +1.2 918,242 - -0.3 918,242 - +2.6 918,242 - -0.4 918,242 - +0.6 918,242 - +0.2 918,242 - +0.6 918,242 - -0.8 918,242 - +0.6 918,242 - +2.9 918,242 - +0.3 918,243 + +0.6 918,243 + +0.4 918,244 - +1.0 918,244 - +0.0 918,244 - -0.1 918,272 + +0.6 918,272 + -1.0 918,272 + -0.6 918,272 + -0.1 918,272 + -0.0 918,272 + +0.2 918,272 + -2.4 918,272 + +0.4 918,272 + -1.6 918,273 - -1.1 918,273 - +1.2 918,273 - -2.6 918,273 - +1.3 918,273 - -0.2 918,273 - +2.6 918,273 - -0.8 918,273 - -0.0 918,273 - +2.1 918,273 - +1.2 918,273 - +0.7 918,273 - -0.0 918,273 - -0.0 918,273 - -0.3 918,273 - -0.9 918,273 - +0.4 918,286 + -0.5 918,287 - +1.7 918,301 + +0.5 918,345 - +1.8 918,345 - -0.2 918,424 + -2.4 918,488 - ABIE53_000846 0.14 -1.8 918,705 + ABIE53_000846 0.53 -0.0 918,705 + ABIE53_000846 0.53 -0.8 918,705 + ABIE53_000846 0.53 -3.2 918,706 - ABIE53_000846 0.53 -2.8 918,706 - ABIE53_000846 0.53 -2.4 918,706 - ABIE53_000846 0.53 -3.1
Or see this region's nucleotide sequence