Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000463 and ABIE53_000464 are separated by 395 nucleotides ABIE53_000464 and ABIE53_000465 are separated by 322 nucleotides
ABIE53_000463: ABIE53_000463 - hypothetical protein, at 500,189 to 500,851
_000463
ABIE53_000464: ABIE53_000464 - DNA-binding protein H-NS, at 501,247 to 501,549
_000464
ABIE53_000465: ABIE53_000465 - cation diffusion facilitator family transporter, at 501,872 to 503,113
_000465
Position (kb) 501
502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 500.362 kb on + strand, within ABIE53_000463 at 500.363 kb on - strand, within ABIE53_000463 at 500.496 kb on - strand, within ABIE53_000463 at 500.496 kb on - strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.525 kb on + strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.526 kb on - strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.579 kb on + strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.580 kb on - strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.581 kb on + strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.582 kb on - strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.732 kb on + strand, within ABIE53_000463 at 500.733 kb on - strand, within ABIE53_000463 at 500.733 kb on - strand, within ABIE53_000463 at 500.733 kb on - strand, within ABIE53_000463 at 500.820 kb on + strand at 500.821 kb on - strand at 500.850 kb on - strand at 500.850 kb on - strand at 500.850 kb on - strand at 500.858 kb on - strand at 500.880 kb on - strand at 500.880 kb on - strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.914 kb on + strand at 500.915 kb on - strand at 500.915 kb on - strand at 500.977 kb on + strand at 500.998 kb on + strand at 500.998 kb on + strand at 500.998 kb on + strand at 500.998 kb on + strand at 501.055 kb on - strand at 501.111 kb on + strand at 501.111 kb on + strand at 501.111 kb on + strand at 501.111 kb on + strand at 501.114 kb on + strand at 501.115 kb on - strand at 501.115 kb on - strand at 501.115 kb on - strand at 501.120 kb on + strand at 501.121 kb on - strand at 501.136 kb on + strand at 501.145 kb on + strand at 501.146 kb on - strand at 501.208 kb on + strand at 501.209 kb on - strand at 501.246 kb on + strand at 501.246 kb on + strand at 501.246 kb on + strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.247 kb on - strand at 501.256 kb on + strand at 501.266 kb on + strand at 501.266 kb on + strand at 501.322 kb on + strand, within ABIE53_000464 at 501.323 kb on - strand, within ABIE53_000464 at 501.364 kb on + strand, within ABIE53_000464 at 501.447 kb on + strand, within ABIE53_000464 at 501.447 kb on + strand, within ABIE53_000464 at 501.447 kb on + strand, within ABIE53_000464 at 501.448 kb on - strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.451 kb on + strand, within ABIE53_000464 at 501.452 kb on - strand, within ABIE53_000464 at 501.452 kb on - strand, within ABIE53_000464 at 501.548 kb on - strand at 501.548 kb on - strand at 501.564 kb on + strand at 501.564 kb on + strand at 501.565 kb on - strand at 501.585 kb on + strand at 501.585 kb on + strand at 501.585 kb on + strand at 501.595 kb on + strand at 501.595 kb on + strand at 501.595 kb on + strand at 501.595 kb on + strand at 501.596 kb on - strand at 501.596 kb on - strand at 501.596 kb on - strand at 501.596 kb on - strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.613 kb on + strand at 501.614 kb on - strand at 501.614 kb on - strand at 501.614 kb on - strand at 501.614 kb on - strand at 501.619 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.624 kb on + strand at 501.625 kb on - strand at 501.625 kb on - strand at 501.625 kb on - strand at 501.627 kb on + strand at 501.628 kb on - strand at 501.628 kb on - strand at 501.669 kb on + strand at 501.669 kb on + strand at 501.670 kb on - strand at 501.826 kb on + strand at 501.840 kb on + strand at 501.840 kb on + strand at 501.928 kb on + strand at 501.928 kb on + strand at 501.928 kb on + strand at 501.928 kb on + strand at 501.929 kb on - strand at 501.929 kb on - strand at 501.929 kb on - strand at 501.929 kb on - strand at 501.940 kb on + strand at 501.941 kb on - strand at 501.941 kb on - strand at 501.941 kb on - strand at 501.941 kb on - strand at 501.952 kb on + strand at 501.953 kb on - strand at 501.957 kb on + strand at 501.957 kb on + strand at 501.957 kb on + strand at 501.957 kb on + strand at 501.958 kb on - strand at 501.958 kb on - strand at 501.958 kb on - strand at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.109 kb on + strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.110 kb on - strand, within ABIE53_000465 at 502.117 kb on + strand, within ABIE53_000465 at 502.117 kb on + strand, within ABIE53_000465 at 502.118 kb on - strand, within ABIE53_000465 at 502.125 kb on - strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.185 kb on + strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.186 kb on - strand, within ABIE53_000465 at 502.250 kb on - strand, within ABIE53_000465 at 502.250 kb on - strand, within ABIE53_000465 at 502.295 kb on + strand, within ABIE53_000465 at 502.295 kb on + strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.296 kb on - strand, within ABIE53_000465 at 502.397 kb on - strand, within ABIE53_000465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 500,362 + ABIE53_000463 0.26 -0.5 500,363 - ABIE53_000463 0.26 -1.4 500,496 - ABIE53_000463 0.46 -2.1 500,496 - ABIE53_000463 0.46 -0.9 500,525 + ABIE53_000463 0.51 -0.1 500,525 + ABIE53_000463 0.51 +0.1 500,525 + ABIE53_000463 0.51 +0.1 500,525 + ABIE53_000463 0.51 +0.2 500,525 + ABIE53_000463 0.51 -1.2 500,526 - ABIE53_000463 0.51 -2.6 500,526 - ABIE53_000463 0.51 -1.2 500,526 - ABIE53_000463 0.51 -1.4 500,526 - ABIE53_000463 0.51 -0.4 500,526 - ABIE53_000463 0.51 +0.1 500,526 - ABIE53_000463 0.51 +0.6 500,526 - ABIE53_000463 0.51 -0.5 500,526 - ABIE53_000463 0.51 +1.6 500,526 - ABIE53_000463 0.51 +0.2 500,526 - ABIE53_000463 0.51 -2.2 500,526 - ABIE53_000463 0.51 +1.6 500,526 - ABIE53_000463 0.51 -1.1 500,526 - ABIE53_000463 0.51 -0.4 500,579 + ABIE53_000463 0.59 -0.4 500,579 + ABIE53_000463 0.59 +1.6 500,579 + ABIE53_000463 0.59 +1.2 500,579 + ABIE53_000463 0.59 +0.6 500,579 + ABIE53_000463 0.59 +0.6 500,579 + ABIE53_000463 0.59 +2.1 500,579 + ABIE53_000463 0.59 +0.1 500,579 + ABIE53_000463 0.59 -0.4 500,580 - ABIE53_000463 0.59 +0.2 500,580 - ABIE53_000463 0.59 -0.2 500,580 - ABIE53_000463 0.59 -0.4 500,580 - ABIE53_000463 0.59 +0.4 500,580 - ABIE53_000463 0.59 +0.5 500,580 - ABIE53_000463 0.59 -0.9 500,581 + ABIE53_000463 0.59 -0.4 500,581 + ABIE53_000463 0.59 -0.2 500,581 + ABIE53_000463 0.59 +0.1 500,581 + ABIE53_000463 0.59 -0.3 500,581 + ABIE53_000463 0.59 -0.6 500,581 + ABIE53_000463 0.59 +0.5 500,581 + ABIE53_000463 0.59 -0.5 500,581 + ABIE53_000463 0.59 +0.9 500,582 - ABIE53_000463 0.59 -2.0 500,582 - ABIE53_000463 0.59 -0.7 500,582 - ABIE53_000463 0.59 -2.3 500,582 - ABIE53_000463 0.59 -1.5 500,732 + ABIE53_000463 0.82 +0.1 500,732 + ABIE53_000463 0.82 -0.8 500,732 + ABIE53_000463 0.82 -2.1 500,732 + ABIE53_000463 0.82 +0.1 500,732 + ABIE53_000463 0.82 +0.1 500,732 + ABIE53_000463 0.82 +0.6 500,732 + ABIE53_000463 0.82 +0.2 500,732 + ABIE53_000463 0.82 -0.5 500,732 + ABIE53_000463 0.82 -0.3 500,732 + ABIE53_000463 0.82 +0.3 500,732 + ABIE53_000463 0.82 -0.4 500,732 + ABIE53_000463 0.82 -1.5 500,732 + ABIE53_000463 0.82 -0.7 500,732 + ABIE53_000463 0.82 -0.0 500,732 + ABIE53_000463 0.82 -1.5 500,732 + ABIE53_000463 0.82 +1.6 500,732 + ABIE53_000463 0.82 -1.2 500,732 + ABIE53_000463 0.82 +0.1 500,732 + ABIE53_000463 0.82 +1.1 500,732 + ABIE53_000463 0.82 -1.1 500,733 - ABIE53_000463 0.82 +0.1 500,733 - ABIE53_000463 0.82 -1.2 500,733 - ABIE53_000463 0.82 -0.9 500,820 + -0.7 500,821 - -2.4 500,850 - -0.3 500,850 - +0.1 500,850 - -1.2 500,858 - -0.4 500,880 - -1.2 500,880 - -2.3 500,914 + +0.1 500,914 + +0.2 500,914 + -0.2 500,914 + +0.9 500,914 + +0.1 500,915 - -1.4 500,915 - -0.9 500,977 + +0.2 500,998 + +0.1 500,998 + +0.4 500,998 + +0.6 500,998 + +0.1 501,055 - +0.6 501,111 + +1.9 501,111 + +2.5 501,111 + +2.5 501,111 + +2.4 501,114 + +4.8 501,115 - -2.5 501,115 - -0.1 501,115 - +0.1 501,120 + +3.1 501,121 - -1.3 501,136 + +3.0 501,145 + +2.6 501,146 - +0.6 501,208 + +5.4 501,209 - +0.1 501,246 + -4.2 501,246 + -0.9 501,246 + -0.9 501,247 - +0.6 501,247 - -0.7 501,247 - -2.6 501,247 - +1.6 501,247 - -1.8 501,247 - +0.1 501,256 + -1.4 501,266 + -3.4 501,266 + -0.7 501,322 + ABIE53_000464 0.25 -1.4 501,323 - ABIE53_000464 0.25 -1.8 501,364 + ABIE53_000464 0.39 -2.1 501,447 + ABIE53_000464 0.66 -0.8 501,447 + ABIE53_000464 0.66 -4.4 501,447 + ABIE53_000464 0.66 -2.2 501,448 - ABIE53_000464 0.66 -2.6 501,451 + ABIE53_000464 0.67 +0.6 501,451 + ABIE53_000464 0.67 -2.7 501,451 + ABIE53_000464 0.67 +0.6 501,451 + ABIE53_000464 0.67 -0.9 501,451 + ABIE53_000464 0.67 -1.8 501,452 - ABIE53_000464 0.68 -2.2 501,452 - ABIE53_000464 0.68 +0.6 501,548 - +0.4 501,548 - -0.4 501,564 + -2.0 501,564 + -1.2 501,565 - +0.3 501,585 + +1.1 501,585 + -0.4 501,585 + -0.5 501,595 + -3.0 501,595 + -0.4 501,595 + -1.5 501,595 + -0.9 501,596 - +0.6 501,596 - +1.1 501,596 - -0.6 501,596 - +1.1 501,613 + -0.2 501,613 + -0.2 501,613 + +0.1 501,613 + -2.7 501,613 + -0.2 501,613 + -2.3 501,613 + -1.5 501,613 + +1.1 501,614 - -0.1 501,614 - +0.1 501,614 - -0.7 501,614 - -1.5 501,619 + -0.5 501,624 + -1.7 501,624 + -2.1 501,624 + -2.8 501,624 + -1.2 501,624 + -0.9 501,624 + -1.8 501,624 + +1.6 501,624 + -0.5 501,625 - -0.5 501,625 - -1.2 501,625 - -0.5 501,627 + -0.8 501,628 - +1.2 501,628 - -0.7 501,669 + +0.1 501,669 + +0.9 501,670 - -1.4 501,826 + -0.9 501,840 + -0.8 501,840 + -0.9 501,928 + -2.0 501,928 + -1.2 501,928 + -2.1 501,928 + -0.7 501,929 - -0.4 501,929 - -0.2 501,929 - -2.4 501,929 - -0.4 501,940 + +0.6 501,941 - -0.7 501,941 - -0.6 501,941 - +2.6 501,941 - -2.1 501,952 + +1.6 501,953 - -0.8 501,957 + -2.4 501,957 + -0.7 501,957 + -1.4 501,957 + -1.5 501,958 - -1.5 501,958 - -0.5 501,958 - -0.7 502,109 + ABIE53_000465 0.19 +1.1 502,109 + ABIE53_000465 0.19 -2.8 502,109 + ABIE53_000465 0.19 -0.7 502,109 + ABIE53_000465 0.19 -0.2 502,109 + ABIE53_000465 0.19 -0.8 502,110 - ABIE53_000465 0.19 -0.4 502,110 - ABIE53_000465 0.19 +0.2 502,110 - ABIE53_000465 0.19 -1.4 502,110 - ABIE53_000465 0.19 -0.2 502,110 - ABIE53_000465 0.19 -0.9 502,110 - ABIE53_000465 0.19 -0.5 502,117 + ABIE53_000465 0.20 -1.6 502,117 + ABIE53_000465 0.20 -1.9 502,118 - ABIE53_000465 0.20 -2.4 502,125 - ABIE53_000465 0.20 -2.1 502,185 + ABIE53_000465 0.25 +0.1 502,185 + ABIE53_000465 0.25 -0.9 502,185 + ABIE53_000465 0.25 -1.8 502,185 + ABIE53_000465 0.25 -1.2 502,185 + ABIE53_000465 0.25 +1.6 502,185 + ABIE53_000465 0.25 -2.1 502,185 + ABIE53_000465 0.25 -0.9 502,186 - ABIE53_000465 0.25 +0.1 502,186 - ABIE53_000465 0.25 +2.6 502,186 - ABIE53_000465 0.25 -1.7 502,186 - ABIE53_000465 0.25 +0.1 502,186 - ABIE53_000465 0.25 -2.1 502,186 - ABIE53_000465 0.25 +0.6 502,250 - ABIE53_000465 0.30 +0.6 502,250 - ABIE53_000465 0.30 +0.1 502,295 + ABIE53_000465 0.34 -1.4 502,295 + ABIE53_000465 0.34 -0.4 502,296 - ABIE53_000465 0.34 +0.3 502,296 - ABIE53_000465 0.34 +0.2 502,296 - ABIE53_000465 0.34 -0.7 502,296 - ABIE53_000465 0.34 -1.8 502,296 - ABIE53_000465 0.34 -0.9 502,296 - ABIE53_000465 0.34 -1.4 502,397 - ABIE53_000465 0.42 +0.6
Or see this region's nucleotide sequence