Strain Fitness in Shewanella oneidensis MR-1 around SO0544.1

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0544 and SO0544.1 overlap by 4 nucleotidesSO0544.1 and SO0545 are separated by 3 nucleotides SO0544: SO0544 - sensory box histidine kinase (NCBI ptt file), at 564,464 to 566,617 SO0544 SO0544.1: SO0544.1 - hypothetical cheY-homologous receiver domain protein (NCBI ptt file), at 566,614 to 567,048 SO0544.1 SO0545: SO0545 - response regulator (NCBI ptt file), at 567,052 to 568,779 SO0545 Position (kb) 566 567 568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 565.617 kb on - strand, within SO0544at 565.654 kb on - strand, within SO0544at 565.660 kb on - strand, within SO0544at 565.670 kb on + strand, within SO0544at 565.678 kb on + strand, within SO0544at 565.678 kb on - strand, within SO0544at 565.686 kb on - strand, within SO0544at 565.750 kb on + strand, within SO0544at 565.758 kb on - strand, within SO0544at 565.758 kb on - strand, within SO0544at 565.790 kb on - strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.818 kb on + strand, within SO0544at 565.891 kb on + strand, within SO0544at 565.891 kb on + strand, within SO0544at 565.903 kb on + strand, within SO0544at 565.903 kb on + strand, within SO0544at 565.912 kb on + strand, within SO0544at 565.912 kb on - strand, within SO0544at 565.913 kb on - strand, within SO0544at 565.913 kb on - strand, within SO0544at 565.920 kb on - strand, within SO0544at 565.920 kb on - strand, within SO0544at 565.956 kb on - strand, within SO0544at 565.990 kb on + strand, within SO0544at 565.996 kb on - strand, within SO0544at 565.996 kb on - strand, within SO0544at 565.996 kb on - strand, within SO0544at 566.006 kb on - strand, within SO0544at 566.013 kb on + strand, within SO0544at 566.016 kb on - strand, within SO0544at 566.086 kb on - strand, within SO0544at 566.175 kb on + strand, within SO0544at 566.329 kb on - strand, within SO0544at 566.335 kb on - strand, within SO0544at 566.342 kb on - strand, within SO0544at 566.393 kb on + strand, within SO0544at 566.402 kb on + strandat 566.454 kb on + strandat 566.486 kb on + strandat 566.495 kb on - strandat 566.691 kb on - strand, within SO0544.1at 566.722 kb on + strand, within SO0544.1at 566.723 kb on - strand, within SO0544.1at 566.752 kb on - strand, within SO0544.1at 566.887 kb on - strand, within SO0544.1at 566.888 kb on + strand, within SO0544.1at 566.892 kb on - strand, within SO0544.1at 566.903 kb on + strand, within SO0544.1at 566.914 kb on + strand, within SO0544.1at 566.914 kb on + strand, within SO0544.1at 566.922 kb on - strand, within SO0544.1at 566.925 kb on + strand, within SO0544.1at 567.026 kb on + strandat 567.041 kb on + strandat 567.041 kb on + strandat 567.049 kb on - strandat 567.134 kb on + strandat 567.134 kb on + strandat 567.170 kb on + strandat 567.170 kb on + strandat 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.439 kb on + strand, within SO0545at 567.515 kb on + strand, within SO0545at 567.523 kb on - strand, within SO0545at 567.556 kb on - strand, within SO0545at 567.679 kb on + strand, within SO0545at 567.679 kb on + strand, within SO0545at 567.679 kb on + strand, within SO0545at 567.687 kb on - strand, within SO0545at 567.687 kb on - strand, within SO0545at 567.689 kb on + strand, within SO0545at 567.786 kb on + strand, within SO0545at 567.842 kb on - strand, within SO0545at 567.874 kb on + strand, within SO0545at 567.938 kb on + strand, within SO0545at 567.980 kb on - strand, within SO0545at 568.022 kb on + strand, within SO0545at 568.038 kb on + strand, within SO0545at 568.045 kb on - strand, within SO0545

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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565,617 - SO0544 0.54 -3.3
565,654 - SO0544 0.55 +1.1
565,660 - SO0544 0.56 +0.2
565,670 + SO0544 0.56 -1.1
565,678 + SO0544 0.56 -0.9
565,678 - SO0544 0.56 +0.1
565,686 - SO0544 0.57 -0.2
565,750 + SO0544 0.60 -0.8
565,758 - SO0544 0.60 +0.1
565,758 - SO0544 0.60 +0.3
565,790 - SO0544 0.62 +0.9
565,799 + SO0544 0.62 -1.0
565,799 + SO0544 0.62 -0.3
565,799 + SO0544 0.62 -2.3
565,799 + SO0544 0.62 -1.5
565,799 + SO0544 0.62 +1.3
565,807 - SO0544 0.62 -0.0
565,807 - SO0544 0.62 -0.1
565,807 - SO0544 0.62 -2.1
565,807 - SO0544 0.62 +1.7
565,818 + SO0544 0.63 -1.4
565,891 + SO0544 0.66 -0.4
565,891 + SO0544 0.66 +0.2
565,903 + SO0544 0.67 -1.3
565,903 + SO0544 0.67 +2.5
565,912 + SO0544 0.67 +0.1
565,912 - SO0544 0.67 +0.8
565,913 - SO0544 0.67 -1.0
565,913 - SO0544 0.67 -1.1
565,920 - SO0544 0.68 +0.2
565,920 - SO0544 0.68 -2.4
565,956 - SO0544 0.69 +0.1
565,990 + SO0544 0.71 -1.1
565,996 - SO0544 0.71 -1.4
565,996 - SO0544 0.71 -0.1
565,996 - SO0544 0.71 +0.2
566,006 - SO0544 0.72 -0.2
566,013 + SO0544 0.72 +0.5
566,016 - SO0544 0.72 -0.5
566,086 - SO0544 0.75 -1.9
566,175 + SO0544 0.79 -0.4
566,329 - SO0544 0.87 +1.1
566,335 - SO0544 0.87 +0.6
566,342 - SO0544 0.87 -2.0
566,393 + SO0544 0.90 -0.2
566,402 + +0.9
566,454 + -0.3
566,486 + +1.1
566,495 - +2.2
566,691 - SO0544.1 0.18 -1.9
566,722 + SO0544.1 0.25 -1.7
566,723 - SO0544.1 0.25 +1.9
566,752 - SO0544.1 0.32 +1.2
566,887 - SO0544.1 0.63 -0.9
566,888 + SO0544.1 0.63 +0.1
566,892 - SO0544.1 0.64 -0.9
566,903 + SO0544.1 0.66 +0.5
566,914 + SO0544.1 0.69 -0.1
566,914 + SO0544.1 0.69 -0.7
566,922 - SO0544.1 0.71 +0.9
566,925 + SO0544.1 0.71 +0.4
567,026 + -0.9
567,041 + +0.2
567,041 + -0.3
567,049 - -0.9
567,134 + +0.5
567,134 + +3.3
567,170 + -1.3
567,170 + -0.9
567,239 + SO0545 0.11 -0.5
567,239 + SO0545 0.11 -0.5
567,239 + SO0545 0.11 -1.5
567,239 + SO0545 0.11 +1.4
567,239 + SO0545 0.11 -2.0
567,247 - SO0545 0.11 -0.3
567,247 - SO0545 0.11 +1.4
567,247 - SO0545 0.11 +0.6
567,247 - SO0545 0.11 +0.8
567,247 - SO0545 0.11 +0.0
567,247 - SO0545 0.11 -1.8
567,247 - SO0545 0.11 +1.4
567,247 - SO0545 0.11 -3.0
567,247 - SO0545 0.11 -0.1
567,247 - SO0545 0.11 +1.3
567,247 - SO0545 0.11 -0.5
567,330 + SO0545 0.16 -1.0
567,330 + SO0545 0.16 -1.6
567,330 + SO0545 0.16 -2.3
567,439 + SO0545 0.22 +0.3
567,515 + SO0545 0.27 -1.9
567,523 - SO0545 0.27 +0.6
567,556 - SO0545 0.29 -0.1
567,679 + SO0545 0.36 +0.3
567,679 + SO0545 0.36 +0.4
567,679 + SO0545 0.36 -2.2
567,687 - SO0545 0.37 +0.5
567,687 - SO0545 0.37 +0.7
567,689 + SO0545 0.37 -1.2
567,786 + SO0545 0.42 +0.2
567,842 - SO0545 0.46 +0.6
567,874 + SO0545 0.48 +0.4
567,938 + SO0545 0.51 +2.0
567,980 - SO0545 0.54 -1.8
568,022 + SO0545 0.56 -1.7
568,038 + SO0545 0.57 -0.8
568,045 - SO0545 0.57 -1.7

Or see this region's nucleotide sequence