Experiment: Post-colonization (Day 7) - Cage1C;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4433 and BT4434 are separated by 171 nucleotides BT4434 and BT4435 are separated by 60 nucleotides BT4435 and BT4436 are separated by 158 nucleotides
BT4433: BT4433 - hypothetical protein (NCBI ptt file), at 5,840,967 to 5,841,416
BT4433
BT4434: BT4434 - hypothetical protein (NCBI ptt file), at 5,841,588 to 5,842,049
BT4434
BT4435: BT4435 - hypothetical protein (NCBI ptt file), at 5,842,110 to 5,842,817
BT4435
BT4436: BT4436 - conserved hypothetical protein (NCBI ptt file), at 5,842,976 to 5,843,680
BT4436
Position (kb) 5841
5842
5843 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5840.650 kb on - strand at 5840.680 kb on - strand at 5840.680 kb on - strand at 5840.683 kb on - strand at 5840.719 kb on - strand at 5840.871 kb on - strand at 5840.946 kb on + strand at 5840.953 kb on - strand at 5840.967 kb on - strand at 5841.062 kb on - strand, within BT4433 at 5841.080 kb on + strand, within BT4433 at 5841.083 kb on - strand, within BT4433 at 5841.083 kb on - strand, within BT4433 at 5841.139 kb on + strand, within BT4433 at 5841.176 kb on + strand, within BT4433 at 5841.177 kb on - strand, within BT4433 at 5841.224 kb on - strand, within BT4433 at 5841.333 kb on - strand, within BT4433 at 5841.344 kb on - strand, within BT4433 at 5841.552 kb on - strand at 5841.555 kb on - strand at 5841.647 kb on + strand, within BT4434 at 5841.710 kb on + strand, within BT4434 at 5841.740 kb on - strand, within BT4434 at 5841.769 kb on - strand, within BT4434 at 5841.934 kb on + strand, within BT4434 at 5841.945 kb on + strand, within BT4434 at 5841.983 kb on - strand, within BT4434 at 5841.988 kb on + strand, within BT4434 at 5841.989 kb on - strand, within BT4434 at 5842.023 kb on + strand at 5842.024 kb on - strand at 5842.025 kb on + strand at 5842.142 kb on - strand at 5842.195 kb on + strand, within BT4435 at 5842.196 kb on - strand, within BT4435 at 5842.212 kb on - strand, within BT4435 at 5842.221 kb on - strand, within BT4435 at 5842.351 kb on - strand, within BT4435 at 5842.460 kb on + strand, within BT4435 at 5842.461 kb on - strand, within BT4435 at 5842.483 kb on + strand, within BT4435 at 5842.593 kb on + strand, within BT4435 at 5842.594 kb on - strand, within BT4435 at 5842.607 kb on - strand, within BT4435 at 5842.627 kb on - strand, within BT4435 at 5842.645 kb on - strand, within BT4435 at 5842.645 kb on - strand, within BT4435 at 5842.661 kb on + strand, within BT4435 at 5842.666 kb on - strand, within BT4435 at 5842.701 kb on - strand, within BT4435 at 5842.701 kb on - strand, within BT4435 at 5842.704 kb on - strand, within BT4435 at 5842.704 kb on - strand, within BT4435 at 5842.710 kb on + strand, within BT4435 at 5842.815 kb on + strand at 5842.836 kb on - strand at 5842.852 kb on - strand at 5842.852 kb on - strand at 5842.885 kb on + strand at 5842.964 kb on + strand at 5842.964 kb on + strand at 5842.964 kb on + strand at 5842.989 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 7) - Cage1C;Mouse1 remove 5,840,650 - -0.5 5,840,680 - -1.0 5,840,680 - -0.0 5,840,683 - -2.0 5,840,719 - -1.9 5,840,871 - -3.0 5,840,946 + -1.6 5,840,953 - -1.8 5,840,967 - -1.0 5,841,062 - BT4433 0.21 -0.6 5,841,080 + BT4433 0.25 -2.9 5,841,083 - BT4433 0.26 -2.8 5,841,083 - BT4433 0.26 +0.4 5,841,139 + BT4433 0.38 -2.8 5,841,176 + BT4433 0.46 -1.2 5,841,177 - BT4433 0.47 -1.3 5,841,224 - BT4433 0.57 -1.6 5,841,333 - BT4433 0.81 +0.5 5,841,344 - BT4433 0.84 -0.5 5,841,552 - -0.1 5,841,555 - -2.3 5,841,647 + BT4434 0.13 +0.1 5,841,710 + BT4434 0.26 -1.7 5,841,740 - BT4434 0.33 -0.2 5,841,769 - BT4434 0.39 -0.5 5,841,934 + BT4434 0.75 -2.9 5,841,945 + BT4434 0.77 -0.9 5,841,983 - BT4434 0.85 -1.9 5,841,988 + BT4434 0.87 -2.1 5,841,989 - BT4434 0.87 -0.2 5,842,023 + -0.6 5,842,024 - -1.1 5,842,025 + -1.5 5,842,142 - -0.0 5,842,195 + BT4435 0.12 -0.9 5,842,196 - BT4435 0.12 -0.1 5,842,212 - BT4435 0.14 -0.2 5,842,221 - BT4435 0.16 +1.1 5,842,351 - BT4435 0.34 -1.2 5,842,460 + BT4435 0.49 +0.8 5,842,461 - BT4435 0.50 +0.4 5,842,483 + BT4435 0.53 +1.3 5,842,593 + BT4435 0.68 -1.1 5,842,594 - BT4435 0.68 +0.6 5,842,607 - BT4435 0.70 -1.6 5,842,627 - BT4435 0.73 -1.5 5,842,645 - BT4435 0.76 -1.9 5,842,645 - BT4435 0.76 -1.5 5,842,661 + BT4435 0.78 -2.3 5,842,666 - BT4435 0.79 -0.9 5,842,701 - BT4435 0.83 -0.9 5,842,701 - BT4435 0.83 -0.5 5,842,704 - BT4435 0.84 -0.7 5,842,704 - BT4435 0.84 -0.2 5,842,710 + BT4435 0.85 +0.3 5,842,815 + -0.5 5,842,836 - -0.6 5,842,852 - -0.3 5,842,852 - -0.7 5,842,885 + -1.1 5,842,964 + -0.9 5,842,964 + -0.4 5,842,964 + -2.2 5,842,989 + -1.2
Or see this region's nucleotide sequence