Experiment: Post-colonization (Day 7) - Cage1C;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0058 and BT0059 overlap by 4 nucleotides BT0059 and BT0060 are separated by 38 nucleotides BT0060 and BT0061 are separated by 15 nucleotides
BT0058: BT0058 - hypothetical protein (NCBI ptt file), at 53,647 to 54,777
BT0058
BT0059: BT0059 - hypothetical protein (NCBI ptt file), at 54,774 to 55,715
BT0059
BT0060: BT0060 - putative polysaccharide export protein (NCBI ptt file), at 55,754 to 56,539
BT0060
BT0061: BT0061 - putative tyrosine-protein kinase ptk (NCBI ptt file), at 56,555 to 58,894
BT0061
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 55.037 kb on - strand, within BT0059 at 55.735 kb on - strand at 55.884 kb on - strand, within BT0060 at 56.059 kb on + strand, within BT0060 at 56.151 kb on - strand, within BT0060 at 56.403 kb on - strand, within BT0060 at 56.426 kb on + strand, within BT0060 at 56.786 kb on + strand at 56.786 kb on + strand at 56.787 kb on - strand at 56.920 kb on + strand, within BT0061 at 56.921 kb on - strand, within BT0061 at 57.053 kb on + strand, within BT0061 at 57.308 kb on + strand, within BT0061 at 57.308 kb on + strand, within BT0061 at 57.309 kb on - strand, within BT0061 at 57.309 kb on - strand, within BT0061 at 57.477 kb on - strand, within BT0061
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 7) - Cage1C;Mouse1 remove 55,037 - BT0059 0.28 +0.0 55,735 - -1.5 55,884 - BT0060 0.17 -1.2 56,059 + BT0060 0.39 -2.4 56,151 - BT0060 0.51 -3.1 56,403 - BT0060 0.83 -0.7 56,426 + BT0060 0.85 -0.3 56,786 + -1.0 56,786 + -1.3 56,787 - -0.8 56,920 + BT0061 0.16 +1.2 56,921 - BT0061 0.16 +1.0 57,053 + BT0061 0.21 +0.1 57,308 + BT0061 0.32 -0.8 57,308 + BT0061 0.32 -2.0 57,309 - BT0061 0.32 -0.5 57,309 - BT0061 0.32 -0.8 57,477 - BT0061 0.39 -1.7
Or see this region's nucleotide sequence