Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0092 and SO_A0093 are separated by 46 nucleotides SO_A0093 and SOA0094 are separated by 109 nucleotides SOA0094 and SOA0095 are separated by 168 nucleotides
SO_A0089: SO_A0089 - no description, at 67,890 to 72,206
_A0089
SO_A0092: SO_A0092 - no description, at 70,596 to 72,206
_A0092
SO_A0093: SO_A0093 - no description, at 72,253 to 73,026
_A0093
SOA0094: SOA0094 - hypothetical protein (NCBI ptt file), at 73,136 to 73,243
SOA0094
SOA0095: SOA0095 - partitioning protein A (NCBI ptt file), at 73,412 to 74,611
SOA0095
Position (kb) 73
74 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 72.248 kb on - strand at 73.082 kb on + strand at 73.082 kb on + strand at 73.084 kb on + strand at 73.090 kb on - strand at 73.192 kb on - strand, within SOA0094 at 73.200 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.205 kb on - strand, within SOA0094 at 73.216 kb on - strand, within SOA0094 at 73.292 kb on + strand at 73.292 kb on + strand at 73.455 kb on - strand at 73.541 kb on + strand, within SOA0095 at 73.574 kb on + strand, within SOA0095 at 73.799 kb on + strand, within SOA0095 at 73.799 kb on + strand, within SOA0095 at 73.825 kb on + strand, within SOA0095 at 73.830 kb on + strand, within SOA0095 at 73.833 kb on - strand, within SOA0095 at 73.836 kb on + strand, within SOA0095 at 73.862 kb on + strand, within SOA0095 at 74.034 kb on + strand, within SOA0095 at 74.034 kb on + strand, within SOA0095 at 74.110 kb on - strand, within SOA0095 at 74.167 kb on - strand, within SOA0095 at 74.235 kb on - strand, within SOA0095
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 72,248 - -2.1 73,082 + -1.2 73,082 + +1.2 73,084 + +0.0 73,090 - +0.2 73,192 - SOA0094 0.52 -1.4 73,200 - SOA0094 0.59 -0.4 73,205 - SOA0094 0.64 +0.5 73,205 - SOA0094 0.64 -1.4 73,205 - SOA0094 0.64 -1.5 73,216 - SOA0094 0.74 -0.4 73,292 + -0.2 73,292 + -0.8 73,455 - -0.5 73,541 + SOA0095 0.11 -0.5 73,574 + SOA0095 0.14 -1.7 73,799 + SOA0095 0.32 -1.5 73,799 + SOA0095 0.32 -0.9 73,825 + SOA0095 0.34 +0.0 73,830 + SOA0095 0.35 -1.4 73,833 - SOA0095 0.35 +1.3 73,836 + SOA0095 0.35 +1.1 73,862 + SOA0095 0.38 -0.8 74,034 + SOA0095 0.52 +3.3 74,034 + SOA0095 0.52 +2.0 74,110 - SOA0095 0.58 +0.8 74,167 - SOA0095 0.63 +0.3 74,235 - SOA0095 0.69 -0.4
Or see this region's nucleotide sequence