Strain Fitness in Shewanella oneidensis MR-1 around SOA0040

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
29,832	+				+0.3
29,832	+		SO_A0039	0.24	-1.9
29,832	-		SO_A0039	0.24	-2.0
29,840	-		SO_A0039	0.24	-0.7
29,852	-		SO_A0039	0.25	-2.1
29,861	+		SO_A0039	0.26	+1.6
29,908	+		SO_A0039	0.31	-0.1
29,915	-		SO_A0039	0.31	+0.8
29,927	-		SO_A0039	0.32	-0.0
29,978	-		SO_A0039	0.37	+0.2
29,988	+		SO_A0039	0.38	-1.1
30,017	+		SO_A0039	0.40	-0.3
30,068	+				+1.7
30,068	+		SO_A0039	0.45	+0.4
30,068	+		SO_A0039	0.45	-1.2
30,068	+		SO_A0039	0.45	-1.2
30,076	-		SO_A0039	0.46	+1.0
30,076	-		SO_A0039	0.46	+0.6
30,133	-		SO_A0039	0.51	+0.6
30,155	+		SO_A0039	0.53	+0.3
30,192	+		SO_A0039	0.56	-1.5
30,192	+		SO_A0039	0.56	-1.4
30,192	+		SO_A0039	0.56	+1.5
30,192	+		SO_A0039	0.56	-1.0
30,192	+		SO_A0039	0.56	-0.6
30,192	+		SO_A0039	0.56	-0.8
30,192	+		SO_A0039	0.56	-1.3
30,192	+		SO_A0039	0.56	-0.0
30,192	+		SO_A0039	0.56	-0.7
30,192	+		SO_A0039	0.56	-1.1
30,192	+		SO_A0039	0.56	-1.1
30,192	+		SO_A0039	0.56	-1.3
30,192	+		SO_A0039	0.56	-0.3
30,192	+		SO_A0039	0.56	-0.5
30,192	+		SO_A0039	0.56	-2.4
30,192	+		SO_A0039	0.56	-0.7
30,192	+		SO_A0039	0.56	-2.8
30,192	+		SO_A0039	0.56	-0.3
30,192	+		SO_A0039	0.56	-0.9
30,192	+		SO_A0039	0.56	-0.7
30,192	+		SO_A0039	0.56	-1.0
30,192	+		SO_A0039	0.56	+0.6
30,192	+		SO_A0039	0.56	-0.3
30,192	+		SO_A0039	0.56	-2.1
30,192	+		SO_A0039	0.56	-2.4
30,200	-		SO_A0039	0.57	-2.4
30,200	-		SO_A0039	0.57	-0.6
30,200	-		SO_A0039	0.57	-0.4
30,200	-		SO_A0039	0.57	-0.5
30,200	-		SO_A0039	0.57	+0.1
30,200	-		SO_A0039	0.57	+0.5
30,200	-		SO_A0039	0.57	-1.0
30,200	-		SO_A0039	0.57	+1.0
30,200	-		SO_A0039	0.57	-1.2
30,200	-		SO_A0039	0.57	-0.3
30,200	-		SO_A0039	0.57	+0.6
30,200	-		SO_A0039	0.57	+0.3
30,200	-		SO_A0039	0.57	-0.7
30,200	-		SO_A0039	0.57	-2.2
30,200	-		SO_A0039	0.57	-0.5
30,200	-		SO_A0039	0.57	+1.0
30,200	-		SO_A0039	0.57	-1.0
30,200	-		SO_A0039	0.57	-2.7
30,200	-		SO_A0039	0.57	-0.4
30,200	-		SO_A0039	0.57	-0.4
30,200	-		SO_A0039	0.57	-0.3
30,200	-		SO_A0039	0.57	+0.5
30,202	-		SO_A0039	0.57	+0.4
30,241	+		SO_A0039	0.61	+0.3
30,248	+		SO_A0039	0.62	+0.9
30,249	-		SO_A0039	0.62	+0.1
30,249	-		SO_A0039	0.62	+0.9
30,249	-		SO_A0039	0.62	+0.2
30,256	-		SO_A0039	0.62	+0.1
30,289	+		SO_A0039	0.65	+0.9
30,289	+		SO_A0039	0.65	-0.6
30,289	+		SO_A0039	0.65	-2.5
30,289	+		SO_A0039	0.65	+1.3
30,289	+		SO_A0039	0.65	+0.3
30,289	+		SO_A0039	0.65	+1.4
30,289	+		SO_A0039	0.65	-0.0
30,289	+		SO_A0039	0.65	+1.0
30,289	+		SO_A0039	0.65	+0.2
30,289	+		SO_A0039	0.65	+1.7
30,289	+		SO_A0039	0.65	+1.4
30,289	+		SO_A0039	0.65	-0.5
30,289	+		SO_A0039	0.65	-0.2
30,289	+		SO_A0039	0.65	-0.3
30,289	+		SO_A0039	0.65	-0.6
30,289	+		SO_A0039	0.65	-2.1
30,289	+		SO_A0039	0.65	-0.5
30,297	-		SO_A0039	0.66	+1.1
30,297	-		SO_A0039	0.66	-0.9
30,297	-		SO_A0039	0.66	-1.7
30,297	-		SO_A0039	0.66	+0.8
30,297	-		SO_A0039	0.66	-0.0
30,297	-		SO_A0039	0.66	-0.3
30,297	-		SO_A0039	0.66	-0.0
30,297	-		SO_A0039	0.66	-2.4
30,297	-		SO_A0039	0.66	+0.1
30,297	-		SO_A0039	0.66	-0.5
30,297	-		SO_A0039	0.66	-1.2
30,297	-		SO_A0039	0.66	-0.1
30,337	-		SO_A0039	0.70	-1.5
30,345	+		SO_A0039	0.70	-0.1
30,351	+		SO_A0039	0.71	-0.2
30,351	+		SO_A0039	0.71	-0.8
30,359	-		SO_A0039	0.72	+0.7
30,361	-		SO_A0039	0.72	-0.2
30,380	-		SO_A0039	0.74	+0.5
30,387	+		SO_A0039	0.74	-0.6
30,397	+		SO_A0039	0.75	+0.3
30,397	+		SO_A0039	0.75	-2.1
30,397	+		SO_A0039	0.75	-1.2
30,397	+		SO_A0039	0.75	+0.3
30,400	+		SO_A0039	0.75	+0.1
30,405	-		SO_A0039	0.76	-0.6
30,405	-		SO_A0039	0.76	-0.6
30,405	-		SO_A0039	0.76	-0.4
30,405	-		SO_A0039	0.76	+1.3
30,405	-		SO_A0039	0.76	+1.3
30,410	+		SO_A0039	0.76	-0.2
30,436	+		SO_A0039	0.79	-0.6
30,436	+		SO_A0039	0.79	-0.1
30,436	+		SO_A0039	0.79	-1.2
30,436	+		SO_A0039	0.79	+0.2
30,436	+		SO_A0039	0.79	+1.6
30,436	+		SO_A0039	0.79	-0.6
30,444	+		SO_A0039	0.79	-1.5
30,444	-		SO_A0039	0.79	+0.2
30,444	-		SO_A0039	0.79	+0.2
30,444	-		SO_A0039	0.79	+1.2
30,444	-		SO_A0039	0.79	+1.1
30,444	-		SO_A0039	0.79	-1.7
30,445	+		SO_A0039	0.80	-0.8
30,449	+		SO_A0039	0.80	+0.2
30,479	-		SO_A0039	0.83	+2.5
30,488	+		SO_A0039	0.83	+0.2
30,514	-		SO_A0039	0.86	+0.4
30,517	+		SO_A0039	0.86	-0.1
30,530	+		SO_A0039	0.87	-0.3
30,533	-		SO_A0039	0.88	+1.6
30,540	+		SO_A0039	0.88	+0.0
30,540	+		SO_A0039	0.88	+1.6
30,540	+		SO_A0039	0.88	+0.5
30,540	+		SO_A0039	0.88	+1.1
30,540	+		SO_A0039	0.88	+2.2
30,540	+		SO_A0039	0.88	-0.5
30,540	+		SO_A0039	0.88	-0.3
30,540	+		SO_A0039	0.88	-1.0
30,540	+		SO_A0039	0.88	+0.1
30,545	+		SO_A0039	0.89	-0.3
30,548	-		SO_A0039	0.89	+0.8
30,548	-		SO_A0039	0.89	-1.4
30,548	-		SO_A0039	0.89	-0.3
30,548	-		SO_A0039	0.89	+1.3
30,548	-		SO_A0039	0.89	+1.2
30,548	-		SO_A0039	0.89	+0.7
30,548	-		SO_A0039	0.89	+0.3
30,548	-		SO_A0039	0.89	-2.1
30,548	-		SO_A0039	0.89	+0.2
30,575	-				-1.4
30,586	+				+2.2
30,586	+				-0.5
30,594	-				-1.1
30,594	-				+0.7
30,602	-				-2.2
30,602	-				+1.1
30,602	-				+1.1
30,614	+				+2.7
30,614	+				-0.1
30,616	-				+0.2
30,631	+				-0.5
30,631	+				-0.4
30,639	+				+0.2
30,639	+				+1.8
30,639	-				+1.3
30,646	+				+0.9
30,646	+				-1.7
30,647	-				+1.0
30,653	+				-0.1
30,680	+				+0.4
30,681	+				+1.8
30,688	+				+1.0
30,688	-				+2.0
30,690	-				+0.6
30,696	-				+1.0
30,696	-				+1.9
30,696	-				+0.5
30,750	+				-0.4
30,750	+				-1.5
30,750	+				-1.8
30,750	+				-1.3
30,750	+				-1.2
30,750	+				+0.4
30,750	+				+0.4
30,750	+				-0.9
30,750	+				+0.6
30,750	+				+1.5
30,750	+				-1.0
30,750	+				-2.5
30,750	+				-1.4
30,750	+				-0.2
30,758	+				+1.4
30,758	+				-0.0
30,758	+				-1.7
30,758	-				+0.7
30,758	-				+0.5
30,758	-				+2.7
30,758	-				+0.7
30,758	-				-2.0
30,758	-				-0.1
30,758	-				-2.9
30,758	-				-1.1
30,758	-				+1.5
30,758	-				+0.2
30,758	-				+0.3
30,758	-				+1.2
30,758	-				-0.8
30,758	-				-1.6
30,758	-				+0.5
30,758	-				+2.1
30,765	+				-1.6
30,766	-				-0.1
30,766	-				+1.3
30,766	-				+1.3
30,766	-				-1.8
30,795	+				-3.2
30,795	+				-3.0
30,810	-				+0.2
30,818	+				-1.5
30,826	-				+1.3
30,874	-		SOA0040	0.17	+1.6
30,919	+		SOA0040	0.35	+0.8
30,919	+		SOA0040	0.35	+0.8
30,919	+		SOA0040	0.35	+2.0
30,923	+		SOA0040	0.36	-1.4
30,933	+		SOA0040	0.40	+0.6
30,934	+		SOA0040	0.40	+1.3
30,967	-		SOA0040	0.54	+1.3
31,058	+				+2.1
31,065	+				+2.2
31,065	+				+1.3
31,065	+				+1.4
31,065	+				+1.0
31,070	+				+2.6
31,070	+				+2.8
31,070	+				+1.8
31,070	+				+2.6
31,073	+				+1.1
31,073	-				+2.6
31,078	-				+2.6
31,088	+				+1.3
31,095	-				+1.5
31,098	+				+1.1
31,098	+				+2.3
31,098	+				+0.8
31,098	+				+2.5
31,098	+				+1.5
31,102	+				+3.5
31,102	+				+1.8
31,106	-				+2.2
31,106	-				+2.3
31,106	-				+2.0
31,106	-				+1.8
31,106	-				+2.5
31,106	-				+2.3
31,106	-				+1.8
31,107	+				+2.7
31,108	+				+1.3
31,108	+				+1.8
31,108	+				-0.4
31,108	+				+3.1
31,108	+				+1.0
31,108	+				+0.7
31,108	+				+3.9
31,108	+				+1.9
31,108	+				+1.5
31,109	+		SOA0041	0.10	+2.3
31,109	+		SOA0041	0.10	+2.4
31,109	+		SOA0041	0.10	+2.6
31,109	+		SOA0041	0.10	+3.1
31,109	+		SOA0041	0.10	+2.2
31,109	+		SOA0041	0.10	+1.9
31,109	+		SOA0041	0.10	+2.4
31,109	+		SOA0041	0.10	+2.0
31,114	+		SOA0041	0.12	+2.5
31,114	+		SOA0041	0.12	+1.6
31,115	-		SOA0041	0.12	+2.6
31,116	-		SOA0041	0.12	+1.3
31,116	-		SOA0041	0.12	+1.4
31,116	-		SOA0041	0.12	+2.3
31,116	-		SOA0041	0.12	+1.8
31,116	-		SOA0041	0.12	+1.4
31,116	-		SOA0041	0.12	+2.4
31,116	-		SOA0041	0.12	-1.4
31,116	-		SOA0041	0.12	+2.6
31,116	-		SOA0041	0.12	+0.1
31,117	-		SOA0041	0.13	-0.8
31,117	-		SOA0041	0.13	+1.7
31,117	-		SOA0041	0.13	+1.7
31,117	-		SOA0041	0.13	+2.5
31,117	-		SOA0041	0.13	+2.0
31,117	-		SOA0041	0.13	+1.6
31,117	-		SOA0041	0.13	+0.3
31,122	-		SOA0041	0.14	+1.0
31,122	-		SOA0041	0.14	+3.0
31,122	-		SOA0041	0.14	+1.7
31,122	-		SOA0041	0.14	+0.5
31,122	-		SOA0041	0.14	+1.6
31,143	+		SOA0041	0.21	+1.8
31,143	+		SOA0041	0.21	+1.7
31,143	+		SOA0041	0.21	+1.1
31,143	+		SOA0041	0.21	+0.6
31,151	-		SOA0041	0.23	+0.4
31,151	-		SOA0041	0.23	+0.3
31,151	-		SOA0041	0.23	+1.8
31,153	+		SOA0041	0.24	+2.8
31,160	+		SOA0041	0.26	+2.4
31,163	-		SOA0041	0.27	+2.3
31,173	+		SOA0041	0.30	+2.3
31,174	+		SOA0041	0.31	+2.3
31,174	+		SOA0041	0.31	+1.3
31,174	+		SOA0041	0.31	+0.6
31,174	+		SOA0041	0.31	+1.0
31,174	+		SOA0041	0.31	+2.2
31,174	+		SOA0041	0.31	+3.2
31,174	+		SOA0041	0.31	+2.2
31,174	+		SOA0041	0.31	+3.2
31,174	+		SOA0041	0.31	+2.9
31,174	+		SOA0041	0.31	+2.8
31,182	-		SOA0041	0.33	+1.0
31,182	-		SOA0041	0.33	+2.4
31,182	-		SOA0041	0.33	+3.1
31,182	-		SOA0041	0.33	+1.3
31,182	-		SOA0041	0.33	+2.8
31,182	-		SOA0041	0.33	+2.0
31,182	-		SOA0041	0.33	+1.0
31,182	-		SOA0041	0.33	+2.0
31,182	-		SOA0041	0.33	+0.9
31,187	+		SOA0041	0.35	+2.3
31,187	+		SOA0041	0.35	+1.9
31,187	+		SOA0041	0.35	+2.1
31,187	+		SOA0041	0.35	+2.1
31,187	+		SOA0041	0.35	+2.0
31,187	+		SOA0041	0.35	+1.9
31,187	+		SOA0041	0.35	+1.2
31,187	+		SOA0041	0.35	+2.9
31,187	+		SOA0041	0.35	+2.3
31,187	+		SOA0041	0.35	+1.6
31,187	+		SOA0041	0.35	+3.0
31,187	+		SOA0041	0.35	+2.0
31,187	+		SOA0041	0.35	+1.9
31,195	+				+1.6
31,195	-		SOA0041	0.37	+2.1
31,195	-		SOA0041	0.37	+2.1
31,195	-		SOA0041	0.37	+2.2
31,195	-		SOA0041	0.37	+1.7
31,195	-		SOA0041	0.37	+1.9
31,195	-		SOA0041	0.37	+2.8
31,195	-		SOA0041	0.37	+2.4
31,195	-		SOA0041	0.37	+2.7
31,195	-		SOA0041	0.37	+2.5
31,195	-		SOA0041	0.37	-0.3
31,202	-		SOA0041	0.39	+0.1
31,209	+		SOA0041	0.42	+1.2
31,209	+		SOA0041	0.42	+1.5
31,209	+		SOA0041	0.42	+2.2
31,209	+		SOA0041	0.42	+2.0
31,209	+		SOA0041	0.42	+2.2
31,216	+		SOA0041	0.44	+2.3
31,216	+		SOA0041	0.44	+1.6
31,217	-		SOA0041	0.44	+1.6
31,217	-		SOA0041	0.44	+2.0
31,217	-		SOA0041	0.44	+2.2
31,217	-		SOA0041	0.44	+2.5
31,217	-		SOA0041	0.44	+0.9
31,217	-		SOA0041	0.44	+1.2
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	+2.5
31,222	+		SOA0041	0.46	+2.7
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	+2.4
31,222	+		SOA0041	0.46	+2.5
31,222	+		SOA0041	0.46	+1.9
31,222	+		SOA0041	0.46	+1.7
31,222	+		SOA0041	0.46	+2.3
31,222	+		SOA0041	0.46	+2.8
31,222	+		SOA0041	0.46	+2.0
31,222	+		SOA0041	0.46	+1.9
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	+2.6
31,222	+		SOA0041	0.46	+2.7
31,222	+		SOA0041	0.46	+1.1
31,222	+		SOA0041	0.46	+3.0
31,222	+		SOA0041	0.46	+2.2
31,222	+		SOA0041	0.46	+0.7
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	+2.8
31,222	+		SOA0041	0.46	+0.4
31,222	+		SOA0041	0.46	+1.4
31,222	+		SOA0041	0.46	+2.3
31,222	+		SOA0041	0.46	+2.2
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	+2.7
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	-1.0
31,222	+		SOA0041	0.46	+2.1
31,222	+		SOA0041	0.46	+2.2
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