Strain Fitness in Shewanella oneidensis MR-1 around SO4539

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,733,101	+		SO4537.2	0.71	-0.1
4,733,173	-		SO4537.2	0.76	-2.6
4,733,222	+		SO4537.2	0.80	-0.1
4,733,297	-		SO4537.2	0.86	-1.6
4,733,350	+		SO4537.2	0.89	+2.6
4,733,380	+				-0.3
4,733,398	+				-0.4
4,733,398	-				+1.2
4,733,416	-				+0.1
4,733,426	+				-1.4
4,733,429	-				+0.6
4,733,436	-				+1.6
4,733,463	+				-1.6
4,733,463	+				+1.0
4,733,463	+				+1.1
4,733,463	+				-0.5
4,733,463	+				-1.1
4,733,471	-				+0.7
4,733,471	-				+0.1
4,733,471	-				-1.0
4,733,471	-				-0.4
4,733,616	-				-0.2
4,733,651	-				-0.4
4,733,944	-				+0.5
4,734,029	+				-0.9
4,734,037	-				-1.3
4,734,037	-				-2.1
4,734,100	-				-0.5
4,734,148	-				+0.2
4,734,150	-				-0.5
4,734,170	-				+1.6
4,734,170	-				+0.7
4,734,210	+				+0.7
4,734,223	-				-2.7
4,734,223	-				-0.3
4,734,260	+				-0.5
4,734,272	+				-1.2
4,734,279	+				+0.1
4,734,285	-				+0.2
4,734,334	-				+1.1
4,734,336	+				-3.2
4,734,344	-				+1.3
4,734,400	+				+0.1
4,734,400	+				+0.3
4,734,408	-				+2.1
4,734,408	-				-0.9
4,734,469	-				-0.8
4,734,575	+		SO4539	0.11	+0.1
4,734,613	+		SO4539	0.12	+0.3
4,734,618	+		SO4539	0.12	-0.1
4,734,618	+		SO4539	0.12	-0.4
4,734,625	+		SO4539	0.12	-1.0
4,734,626	-		SO4539	0.12	-0.7
4,734,633	-		SO4539	0.12	+2.3
4,734,633	-				+2.7
4,734,633	-		SO4539	0.12	+2.4
4,734,633	-		SO4539	0.12	+0.2
4,734,686	+		SO4539	0.13	-0.1
4,734,686	+		SO4539	0.13	+1.0
4,734,686	+		SO4539	0.13	+0.4
4,734,694	-		SO4539	0.13	-0.4
4,734,694	-		SO4539	0.13	-1.8
4,734,694	-		SO4539	0.13	-1.0
4,734,733	+		SO4539	0.14	+0.5
4,734,810	+		SO4539	0.16	+0.1
4,734,810	+		SO4539	0.16	-0.6
4,734,810	+		SO4539	0.16	-1.0
4,734,818	-		SO4539	0.16	-1.0
4,734,818	-		SO4539	0.16	+1.3
4,734,835	+		SO4539	0.16	+0.2
4,734,842	+		SO4539	0.16	-0.1
4,734,864	+		SO4539	0.17	-1.1
4,734,949	+		SO4539	0.18	+0.6
4,734,949	+		SO4539	0.18	-0.1
4,734,949	+		SO4539	0.18	+0.6
4,734,949	+		SO4539	0.18	-1.3
4,734,957	-		SO4539	0.19	+0.4
4,734,967	-		SO4539	0.19	+0.1
4,735,054	+		SO4539	0.21	-1.5
4,735,061	+		SO4539	0.21	+0.5
4,735,061	+		SO4539	0.21	-0.1
4,735,069	-		SO4539	0.21	-0.0
4,735,069	-		SO4539	0.21	+2.4
4,735,069	-		SO4539	0.21	+0.6
4,735,069	-		SO4539	0.21	-0.7
4,735,071	+		SO4539	0.21	-0.6
4,735,071	+		SO4539	0.21	-1.6
4,735,071	+		SO4539	0.21	-0.1
4,735,071	+		SO4539	0.21	-0.0
4,735,071	+		SO4539	0.21	+0.7
4,735,071	+		SO4539	0.21	-0.8
4,735,071	+		SO4539	0.21	-1.6
4,735,071	+		SO4539	0.21	-2.7
4,735,071	+		SO4539	0.21	+1.4
4,735,071	+		SO4539	0.21	-0.4
4,735,071	+		SO4539	0.21	-0.4
4,735,071	+		SO4539	0.21	+1.0
4,735,071	+		SO4539	0.21	+0.4
4,735,071	+		SO4539	0.21	-0.5
4,735,071	+		SO4539	0.21	-0.1
4,735,071	+		SO4539	0.21	-1.1
4,735,071	+		SO4539	0.21	-0.4
4,735,079	-		SO4539	0.21	+2.2
4,735,079	-		SO4539	0.21	+0.4
4,735,079	-		SO4539	0.21	-0.7
4,735,079	-		SO4539	0.21	-1.9
4,735,079	-		SO4539	0.21	-0.9
4,735,079	-		SO4539	0.21	-0.4
4,735,079	-		SO4539	0.21	+1.5
4,735,079	-		SO4539	0.21	-1.1
4,735,079	-		SO4539	0.21	+0.6
4,735,079	-		SO4539	0.21	-0.2
4,735,079	-		SO4539	0.21	-2.5
4,735,079	-		SO4539	0.21	+0.8
4,735,165	-		SO4539	0.23	+0.6
4,735,197	-		SO4539	0.24	-1.7
4,735,217	-		SO4539	0.24	-0.1
4,735,282	+		SO4539	0.25	+1.0
4,735,290	-		SO4539	0.25	+0.4
4,735,290	-		SO4539	0.25	+1.0
4,735,290	-		SO4539	0.25	+0.3
4,735,315	-		SO4539	0.26	-0.7
4,735,333	-		SO4539	0.26	-1.6
4,735,335	-		SO4539	0.26	-3.3
4,735,345	-		SO4539	0.27	+0.4
4,735,354	+		SO4539	0.27	-1.6
4,735,401	-		SO4539	0.28	-2.1
4,735,470	+		SO4539	0.29	+2.2
4,735,478	-		SO4539	0.29	-0.7
4,735,480	+		SO4539	0.29	+1.0
4,735,488	-		SO4539	0.29	-0.3
4,735,519	+		SO4539	0.30	-0.8
4,735,519	+		SO4539	0.30	+0.4
4,735,570	+		SO4539	0.31	-0.0
4,735,570	+		SO4539	0.31	+0.4
4,735,570	+		SO4539	0.31	-0.5
4,735,578	-		SO4539	0.31	-0.8
4,735,578	-		SO4539	0.31	-1.0
4,735,578	-		SO4539	0.31	-0.0
4,735,588	-		SO4539	0.31	+1.1
4,735,604	+		SO4539	0.32	-1.1
4,735,716	-		SO4539	0.34	-1.2
4,735,779	-		SO4539	0.35	-1.2
4,735,938	+		SO4539	0.39	-1.0
4,735,954	+		SO4539	0.39	+2.7
4,735,961	+		SO4539	0.39	-0.5
4,736,119	-		SO4539	0.42	+0.4
4,736,142	+		SO4539	0.43	+0.6
4,736,150	-		SO4539	0.43	+0.7
4,736,150	-		SO4539	0.43	-0.5
4,736,224	+		SO4539	0.44	+1.6
4,736,224	+		SO4539	0.44	-1.0
4,736,232	-		SO4539	0.45	+0.1
4,736,258	+		SO4539	0.45	+1.1
4,736,285	+		SO4539	0.46	-0.2
4,736,313	-		SO4539	0.46	-2.3
4,736,318	+		SO4539	0.46	+0.1
4,736,428	+		SO4539	0.49	+0.2
4,736,428	+		SO4539	0.49	-1.1
4,736,428	+		SO4539	0.49	-1.1
4,736,436	-		SO4539	0.49	+0.2
4,736,577	-		SO4539	0.52	+0.1
4,736,595	+		SO4539	0.52	-1.0
4,736,645	-		SO4539	0.53	-0.2
4,736,807	+		SO4539	0.56	-0.2
4,736,807	+		SO4539	0.56	-1.6
4,736,807	+		SO4539	0.56	+1.0
4,736,863	+		SO4539	0.57	-0.7
4,736,863	+		SO4539	0.57	-0.9
4,736,863	+		SO4539	0.57	-0.6
4,736,902	-		SO4539	0.58	+0.4
4,736,904	+		SO4539	0.58	-0.7
4,736,983	+		SO4539	0.60	-0.1
4,736,991	-		SO4539	0.60	-0.1
4,736,998	+		SO4539	0.60	-1.1
4,737,099	+		SO4539	0.62	+1.3
4,737,105	-		SO4539	0.62	+1.3
4,737,193	+		SO4539	0.64	-1.6
4,737,193	+		SO4539	0.64	+0.6
4,737,193	+		SO4539	0.64	+0.7
4,737,193	+		SO4539	0.64	+0.9
4,737,201	-		SO4539	0.64	-0.9
4,737,201	-		SO4539	0.64	-1.3
4,737,201	-		SO4539	0.64	+1.2
4,737,207	-		SO4539	0.64	+0.3
4,737,217	-		SO4539	0.65	+1.2
4,737,235	+		SO4539	0.65	+0.5
4,737,240	+		SO4539	0.65	+1.1
4,737,250	+		SO4539	0.65	+1.3
4,737,317	-		SO4539	0.67	-2.7
4,737,372	-		SO4539	0.68	-1.0
4,737,378	+		SO4539	0.68	-0.9
4,737,382	-		SO4539	0.68	+0.4
4,737,382	-		SO4539	0.68	-0.1
4,737,493	+		SO4539	0.70	-0.8
4,737,694	+		SO4539	0.74	+0.1
4,737,694	+		SO4539	0.74	-0.1
4,737,781	-		SO4539	0.76	-1.7
4,737,810	-		SO4539	0.77	+1.6
4,737,928	+		SO4539	0.79	-0.2
4,737,946	-		SO4539	0.80	+0.1
4,738,085	-		SO4539	0.82	+0.6
4,738,158	-		SO4539	0.84	+0.4
4,738,158	-		SO4539	0.84	+0.3
4,738,164	+		SO4539	0.84	+0.6
4,738,192	-		SO4539	0.85	-1.1
4,738,243	+		SO4539	0.86	-0.6
4,738,305	-		SO4539	0.87	-0.4
4,738,340	+		SO4539	0.88	+0.2
4,738,356	-		SO4539	0.88	+0.5
4,738,405	-		SO4539	0.89	-0.2
4,738,412	-		SO4539	0.89	-0.4
4,738,465	+				+1.3
4,738,487	-				-0.7
4,738,555	+				-0.1
4,738,566	-				-2.1
4,738,566	-				-0.3
4,738,597	-				-1.8
4,738,597	-				-1.2
4,738,614	+				+0.1
4,738,659	+				-0.9
4,738,718	+				+0.5
4,738,780	-				+1.0
4,738,780	-				+0.7
4,738,780	-				+0.6
4,738,819	-				+1.5
4,738,854	+				-0.9
4,738,854	+				+0.4
4,738,862	-				-0.8
4,738,862	-				+0.7
4,738,873	-				+0.1
4,738,879	+				+0.4
4,738,912	+				-1.3
4,739,125	+				-1.6
4,739,321	+		SO4542	0.10	-3.3
4,739,321	+		SO4542	0.10	+0.9
4,739,349	+		SO4542	0.13	+0.4
4,739,521	+		SO4542	0.32	-1.8
4,739,527	+		SO4542	0.33	-0.6
4,739,555	-		SO4542	0.36	-0.4
4,739,602	+		SO4542	0.42	+0.2
4,739,609	+		SO4542	0.42	-2.3
4,739,618	-		SO4542	0.43	-0.4
4,739,628	-		SO4542	0.44	+0.3
4,739,650	-		SO4542	0.47	-0.6
4,739,663	+		SO4542	0.48	-0.2
4,739,663	+		SO4542	0.48	+0.2
4,739,744	+		SO4542	0.57	+0.1
4,739,747	-		SO4542	0.58	-0.2
4,739,755	+		SO4542	0.59	-1.4
4,739,763	-		SO4542	0.60	+0.9
4,739,763	-		SO4542	0.60	-0.7
4,739,784	-		SO4542	0.62	-0.2
4,739,791	+		SO4542	0.63	+1.7
4,739,793	-		SO4542	0.63	-0.9
4,739,837	+		SO4542	0.68	-1.7
4,739,838	+		SO4542	0.68	-0.9
4,739,879	+		SO4542	0.73	-2.3
4,739,879	+		SO4542	0.73	-0.1
4,739,879	+		SO4542	0.73	+0.4
4,739,887	-		SO4542	0.74	-0.4
4,739,914	+		SO4542	0.77	+0.5
4,739,914	+		SO4542	0.77	+2.1
4,739,914	+		SO4542	0.77	-0.4
4,739,927	+		SO4542	0.78	-1.3
4,739,933	-		SO4542	0.79	-1.5