Strain Fitness in Shewanella oneidensis MR-1 around SO4515

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,708,179	-		SO4513	0.90	-0.8
4,708,241	-				-0.3
4,708,261	+				-0.3
4,708,264	-				-1.7
4,708,296	+				-0.8
4,708,304	-				+1.4
4,708,304	-				+0.8
4,708,362	+				+0.2
4,708,400	+				-0.9
4,708,405	+				+0.6
4,708,408	-				-0.7
4,708,448	+				-1.2
4,708,491	-				-3.1
4,708,491	-				-0.9
4,708,534	+				-0.4
4,708,562	+				+0.3
4,708,685	+	fdhB-2	SO4514	0.31	+0.1
4,708,693	-	fdhB-2	SO4514	0.33	-0.6
4,708,753	-	fdhB-2	SO4514	0.43	-1.3
4,708,880	-	fdhB-2	SO4514	0.65	-1.9
4,708,954	+	fdhB-2	SO4514	0.78	+2.3
4,708,962	-	fdhB-2	SO4514	0.80	-1.8
4,708,962	-	fdhB-2	SO4514	0.80	+0.8
4,708,962	-	fdhB-2	SO4514	0.80	+0.4
4,708,964	+	fdhB-2	SO4514	0.80	-1.5
4,708,964	+	fdhB-2	SO4514	0.80	+0.2
4,708,972	-	fdhB-2	SO4514	0.82	-0.6
4,709,081	+				+0.8
4,709,109	-				-0.6
4,709,177	+				-2.2
4,709,181	-				+1.4
4,709,185	-				-1.1
4,709,185	-				-0.4
4,709,192	+				-0.5
4,709,197	+				-1.1
4,709,234	-				+0.6
4,709,276	+		SO4515	0.12	-1.2
4,709,278	+		SO4515	0.13	-0.8
4,709,278	+		SO4515	0.13	+0.0
4,709,278	+		SO4515	0.13	-1.5
4,709,318	-		SO4515	0.17	-0.5
4,709,343	+		SO4515	0.19	+0.3
4,709,343	+		SO4515	0.19	-0.8
4,709,343	+		SO4515	0.19	-1.0
4,709,343	-		SO4515	0.19	-1.7
4,709,351	-		SO4515	0.20	+1.7
4,709,358	+		SO4515	0.21	+0.0
4,709,358	+		SO4515	0.21	+0.1
4,709,379	+		SO4515	0.23	-1.4
4,709,455	+		SO4515	0.31	-1.1
4,709,489	+		SO4515	0.34	-0.7
4,709,489	+		SO4515	0.34	+2.3
4,709,565	+		SO4515	0.42	-1.4
4,709,633	+		SO4515	0.49	+0.9
4,709,635	-		SO4515	0.49	-0.9
4,709,635	-		SO4515	0.49	-0.2
4,709,703	+		SO4515	0.56	-1.7
4,709,770	+		SO4515	0.63	-0.5
4,709,800	-		SO4515	0.66	-3.8
4,709,800	-		SO4515	0.66	-0.7
4,709,808	-		SO4515	0.67	-0.2
4,709,847	+		SO4515	0.71	-0.2
4,709,847	+		SO4515	0.71	-0.9
4,709,847	-		SO4515	0.71	+0.6
4,709,898	+		SO4515	0.76	-1.6
4,709,916	-		SO4515	0.78	-2.4
4,709,925	+		SO4515	0.78	-0.7
4,709,945	+		SO4515	0.80	-0.9
4,709,945	+		SO4515	0.80	-2.3
4,709,955	+		SO4515	0.82	+1.0
4,709,955	+		SO4515	0.82	-0.3
4,709,955	+		SO4515	0.82	-0.9
4,709,965	-		SO4515	0.83	-1.2
4,709,998	-		SO4515	0.86	-1.6
4,710,033	+		SO4515	0.89	-1.4
4,710,033	+		SO4515	0.89	+0.1
4,710,041	-				-0.6
4,710,131	+				+0.7
4,710,131	+				-0.0
4,710,221	+				+0.2
4,710,221	+				-0.4
4,710,317	+				-2.4
4,710,388	+				+1.9
4,710,462	+	viuA	SO4516	0.12	+0.4
4,710,542	+	viuA	SO4516	0.16	+1.2
4,710,669	+	viuA	SO4516	0.22	+2.4
4,710,723	-	viuA	SO4516	0.24	+0.7
4,710,804	+	viuA	SO4516	0.28	+2.0
4,710,807	-	viuA	SO4516	0.28	-0.3
4,710,812	-	viuA	SO4516	0.29	-1.4
4,710,812	-	viuA	SO4516	0.29	-2.1
4,710,862	-	viuA	SO4516	0.31	-1.2
4,710,903	+	viuA	SO4516	0.33	-1.0
4,710,929	+	viuA	SO4516	0.34	+0.5
4,710,954	+	viuA	SO4516	0.36	-0.2
4,710,954	+	viuA	SO4516	0.36	+1.2
4,710,962	-	viuA	SO4516	0.36	+1.9
4,710,970	-	viuA	SO4516	0.36	+1.5
4,711,056	+	viuA	SO4516	0.40	+0.8
4,711,080	+	viuA	SO4516	0.42	-1.6