Strain Fitness in Shewanella oneidensis MR-1 around SO4505

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,695,910	+		SO4503	0.88	+0.8
4,695,910	+		SO4503	0.88	-0.9
4,695,910	+		SO4503	0.88	-1.9
4,695,925	-		SO4503	0.90	-0.1
4,695,933	+				-0.6
4,695,950	+				-0.7
4,696,028	+				+1.2
4,696,096	-				-0.4
4,696,107	-				-2.9
4,696,174	+				+0.8
4,696,209	-				-0.1
4,696,402	-				-2.1
4,696,412	+				-0.5
4,696,454	+				-2.7
4,696,461	+				-0.6
4,696,510	-		SO4504	0.14	-0.9
4,696,564	+		SO4504	0.26	-2.4
4,696,564	+		SO4504	0.26	+0.0
4,696,564	+		SO4504	0.26	-3.2
4,696,564	+		SO4504	0.26	-1.4
4,696,572	-		SO4504	0.28	+0.9
4,696,580	+		SO4504	0.29	-2.4
4,696,580	+		SO4504	0.29	-0.7
4,696,580	+		SO4504	0.29	-0.2
4,696,580	+		SO4504	0.29	-0.6
4,696,580	+		SO4504	0.29	+1.7
4,696,580	+		SO4504	0.29	-1.1
4,696,580	+		SO4504	0.29	-1.2
4,696,580	+		SO4504	0.29	-2.2
4,696,580	+		SO4504	0.29	-1.4
4,696,580	+		SO4504	0.29	-2.2
4,696,580	+		SO4504	0.29	-1.0
4,696,580	+		SO4504	0.29	-1.8
4,696,588	-		SO4504	0.31	-1.6
4,696,588	-		SO4504	0.31	-0.2
4,696,588	-		SO4504	0.31	-0.6
4,696,588	-		SO4504	0.31	+1.1
4,696,588	-		SO4504	0.31	+0.4
4,696,588	-		SO4504	0.31	+0.2
4,696,588	-		SO4504	0.31	+0.1
4,696,588	-		SO4504	0.31	-2.3
4,696,588	-		SO4504	0.31	-0.2
4,696,588	-		SO4504	0.31	+0.9
4,696,588	-		SO4504	0.31	-1.8
4,696,588	-		SO4504	0.31	-1.3
4,696,590	+		SO4504	0.31	-0.6
4,696,656	+		SO4504	0.46	-0.8
4,696,704	+		SO4504	0.56	+0.3
4,696,744	-		SO4504	0.65	-0.6
4,696,775	-		SO4504	0.71	-0.1
4,696,803	-		SO4504	0.77	-1.7
4,696,977	+		SO4505	0.11	-1.2
4,696,977	+		SO4505	0.11	-0.9
4,696,985	-		SO4505	0.12	+0.1
4,696,985	-		SO4505	0.12	+0.1
4,697,042	+		SO4505	0.20	-0.4
4,697,047	+		SO4505	0.21	-1.4
4,697,050	-		SO4505	0.22	-2.2
4,697,055	-		SO4505	0.22	-2.7
4,697,055	-		SO4505	0.22	-1.4
4,697,055	-		SO4505	0.22	+0.7
4,697,055	-		SO4505	0.22	-0.3
4,697,055	-		SO4505	0.22	-2.3
4,697,055	-		SO4505	0.22	-0.2
4,697,055	-		SO4505	0.22	-1.2
4,697,072	+		SO4505	0.25	-0.7
4,697,101	-		SO4505	0.29	+0.4
4,697,133	-		SO4505	0.34	-1.6
4,697,138	-		SO4505	0.35	+0.0
4,697,148	-		SO4505	0.37	-0.3
4,697,193	-		SO4505	0.43	-1.5
4,697,297	+		SO4505	0.59	+0.1
4,697,310	+		SO4505	0.61	-0.9
4,697,318	-		SO4505	0.62	+0.4
4,697,370	-		SO4505	0.70	-2.1
4,697,411	+		SO4505	0.77	-1.0
4,697,538	+				-0.6
4,697,630	-				-1.7
4,697,718	-				-0.7
4,697,752	-				-1.5
4,697,752	-				-0.2
4,697,765	-				-1.4
4,697,850	+				-0.5
4,698,071	+		SO4506	0.20	+0.4
4,698,110	-		SO4506	0.22	-2.4
4,698,110	-		SO4506	0.22	-0.1
4,698,203	+		SO4506	0.28	-1.0
4,698,338	-		SO4506	0.36	-0.3
4,698,357	-		SO4506	0.37	-0.0
4,698,365	-		SO4506	0.38	+1.0
4,698,427	-		SO4506	0.41	-1.8
4,698,493	-		SO4506	0.45	-0.7
4,698,529	+		SO4506	0.47	-1.3
4,698,529	+		SO4506	0.47	-1.6
4,698,529	+		SO4506	0.47	-1.5
4,698,529	+		SO4506	0.47	+0.5
4,698,529	+		SO4506	0.47	-0.8