Strain Fitness in Shewanella oneidensis MR-1 around SO4400

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,591,532	-		SO4398	0.18	-0.7
4,591,532	-		SO4398	0.18	-0.4
4,591,547	-		SO4398	0.22	-0.8
4,591,547	-		SO4398	0.22	+0.3
4,591,576	+		SO4398	0.29	+0.5
4,591,584	-		SO4398	0.30	+0.5
4,591,590	-		SO4398	0.32	+0.0
4,591,618	+		SO4398	0.38	+0.6
4,591,618	+		SO4398	0.38	+0.2
4,591,626	-		SO4398	0.40	-2.5
4,591,626	-		SO4398	0.40	-0.4
4,591,626	-		SO4398	0.40	+1.5
4,591,626	-		SO4398	0.40	+1.5
4,591,631	-		SO4398	0.41	+0.5
4,591,677	+		SO4398	0.52	+1.0
4,591,685	-		SO4398	0.53	+0.7
4,591,794	-		SO4398	0.78	-1.2
4,591,799	-		SO4398	0.79	-1.6
4,591,875	-				+0.9
4,591,902	+				+0.1
4,591,937	+				-0.8
4,591,946	+				-1.2
4,591,956	+				-0.2
4,591,962	+				+0.7
4,591,962	+				-1.5
4,591,962	+				-1.2
4,591,967	+		SO4399	0.10	+0.7
4,591,970	-		SO4399	0.11	+0.8
4,591,970	-		SO4399	0.11	-1.3
4,591,970	-		SO4399	0.11	-1.1
4,592,005	+		SO4399	0.16	+0.8
4,592,005	+		SO4399	0.16	-0.9
4,592,005	+		SO4399	0.16	-1.0
4,592,005	+		SO4399	0.16	-1.6
4,592,006	-		SO4399	0.17	-0.3
4,592,048	+		SO4399	0.23	+1.1
4,592,146	+		SO4399	0.39	-0.7
4,592,146	+		SO4399	0.39	+1.0
4,592,146	+		SO4399	0.39	+0.8
4,592,154	-		SO4399	0.41	-0.5
4,592,154	-		SO4399	0.41	-0.7
4,592,271	-		SO4399	0.60	+1.9
4,592,297	+		SO4399	0.64	-0.3
4,592,443	+		SO4399	0.88	-1.3
4,592,621	-		SO4400	0.11	+0.2
4,592,621	-		SO4400	0.11	+1.5
4,592,641	-		SO4400	0.13	-2.9
4,592,756	-		SO4400	0.25	-0.3
4,592,788	+		SO4400	0.29	-1.2
4,592,788	+		SO4400	0.29	+0.4
4,592,788	+		SO4400	0.29	+0.1
4,592,794	-		SO4400	0.29	-1.0
4,592,796	-		SO4400	0.29	-1.3
4,592,796	-		SO4400	0.29	-1.0
4,592,796	-		SO4400	0.29	+1.1
4,592,796	-		SO4400	0.29	-0.3
4,592,865	-		SO4400	0.37	-2.9
4,592,871	-		SO4400	0.37	-0.3
4,592,890	+		SO4400	0.39	-0.8
4,593,341	-		SO4400	0.86	-0.1
4,593,548	+				-1.0
4,593,556	-				-1.6
4,593,623	+				+1.7
4,593,690	-				-0.5
4,593,860	+	rbn	SO4401	0.21	-0.8
4,593,926	-	rbn	SO4401	0.28	+0.5
4,594,063	-	rbn	SO4401	0.44	+0.9
4,594,067	+	rbn	SO4401	0.44	-1.1
4,594,067	+	rbn	SO4401	0.44	-0.8
4,594,075	-	rbn	SO4401	0.45	-0.8
4,594,075	-	rbn	SO4401	0.45	+0.9
4,594,075	-	rbn	SO4401	0.45	-0.7
4,594,098	+	rbn	SO4401	0.48	+0.8
4,594,106	-	rbn	SO4401	0.49	-0.2
4,594,111	-	rbn	SO4401	0.49	+0.5
4,594,245	+	rbn	SO4401	0.64	-0.5
4,594,245	+	rbn	SO4401	0.64	+1.5
4,594,245	+	rbn	SO4401	0.64	-0.3
4,594,253	-	rbn	SO4401	0.65	-0.2
4,594,253	-	rbn	SO4401	0.65	+0.8
4,594,417	-	rbn	SO4401	0.84	-0.3
4,594,428	-	rbn	SO4401	0.85	+2.2
4,594,430	+	rbn	SO4401	0.85	+2.5
4,594,435	+	rbn	SO4401	0.86	+0.6