Strain Fitness in Shewanella oneidensis MR-1 around SO4381

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,575,659	-		SO4380	0.19	-0.9
4,575,680	+		SO4380	0.21	+0.3
4,575,680	+		SO4380	0.21	-0.2
4,575,727	+		SO4380	0.24	+0.4
4,575,829	+		SO4380	0.33	-2.3
4,575,922	-		SO4380	0.40	+0.7
4,575,941	-		SO4380	0.42	+0.6
4,575,950	+		SO4380	0.43	-1.2
4,575,958	-		SO4380	0.43	+0.3
4,575,958	-		SO4380	0.43	+1.8
4,576,119	-		SO4380	0.57	-0.1
4,576,119	-		SO4380	0.57	-1.0
4,576,189	+		SO4380	0.62	+0.1
4,576,191	+		SO4380	0.62	+2.5
4,576,191	+		SO4380	0.62	+0.2
4,576,191	+		SO4380	0.62	+0.9
4,576,236	+		SO4380	0.66	+2.6
4,576,399	+		SO4380	0.80	-0.9
4,576,405	+		SO4380	0.80	-0.4
4,576,414	-		SO4380	0.81	+0.8
4,576,561	-				-0.8
4,576,648	-				+0.7
4,576,660	+				-0.7
4,576,706	+				-0.8
4,576,729	-		SO4381	0.14	+0.2
4,576,809	+		SO4381	0.29	+0.9
4,576,824	-		SO4381	0.31	+0.2
4,576,847	+		SO4381	0.36	-2.7
4,576,865	-		SO4381	0.39	-1.1
4,576,985	-		SO4381	0.61	+0.5
4,576,994	+		SO4381	0.63	+0.6
4,577,024	+		SO4381	0.68	-0.1
4,577,024	+		SO4381	0.68	+0.1
4,577,032	-		SO4381	0.70	-0.0
4,577,032	-		SO4381	0.70	-1.0
4,577,046	-		SO4381	0.72	+0.8
4,577,047	+		SO4381	0.73	+1.4
4,577,056	-		SO4381	0.74	+1.1
4,577,075	+		SO4381	0.78	-2.1
4,577,152	-				+0.9
4,577,176	+				+1.0
4,577,176	+				-2.8
4,577,181	+				-0.1
4,577,184	-				-0.3
4,577,184	-				-0.2
4,577,197	-				+0.0
4,577,197	-				-2.2
4,577,202	+				-0.8
4,577,202	+				-0.8
4,577,210	-				+0.2
4,577,210	-				-0.1
4,577,324	+				+0.6
4,577,355	+				+0.5
4,577,355	+				-0.3
4,577,355	+				-0.1
4,577,363	-				+0.2
4,577,363	-				-1.7
4,577,363	-				-0.2
4,577,417	+	fabG-2	SO4382	0.16	-0.1
4,577,430	+	fabG-2	SO4382	0.18	+0.4
4,577,451	+	fabG-2	SO4382	0.21	+1.4
4,577,451	+	fabG-2	SO4382	0.21	+0.5
4,577,453	-	fabG-2	SO4382	0.21	-1.5
4,577,453	-	fabG-2	SO4382	0.21	-1.2
4,577,473	-	fabG-2	SO4382	0.24	+0.9
4,577,495	+	fabG-2	SO4382	0.27	-2.9
4,577,566	+	fabG-2	SO4382	0.37	-0.2
4,577,616	+	fabG-2	SO4382	0.44	-0.6
4,577,619	-	fabG-2	SO4382	0.44	-1.7
4,577,626	+	fabG-2	SO4382	0.45	-2.5
4,577,659	+	fabG-2	SO4382	0.49	+1.0
4,577,664	+	fabG-2	SO4382	0.50	-1.1
4,577,686	+	fabG-2	SO4382	0.53	-1.1
4,577,728	-	fabG-2	SO4382	0.59	-2.1
4,577,739	+	fabG-2	SO4382	0.60	+0.7
4,577,752	+	fabG-2	SO4382	0.62	-1.2
4,577,764	+	fabG-2	SO4382	0.64	-0.7
4,577,772	-	fabG-2	SO4382	0.65	+0.2
4,577,772	-	fabG-2	SO4382	0.65	-1.7
4,577,790	+	fabG-2	SO4382	0.67	-1.3
4,577,802	+	fabG-2	SO4382	0.69	+0.0
4,577,802	+	fabG-2	SO4382	0.69	+0.3
4,577,802	+	fabG-2	SO4382	0.69	+2.7
4,577,802	+	fabG-2	SO4382	0.69	+1.0
4,577,802	+	fabG-2	SO4382	0.69	-0.6
4,577,802	+	fabG-2	SO4382	0.69	-0.5
4,577,802	+	fabG-2	SO4382	0.69	-0.1
4,577,802	+	fabG-2	SO4382	0.69	-1.2
4,577,802	+	fabG-2	SO4382	0.69	-0.4
4,577,810	-	fabG-2	SO4382	0.70	-2.0
4,577,810	-	fabG-2	SO4382	0.70	-1.5
4,577,810	-	fabG-2	SO4382	0.70	-0.7
4,577,810	-	fabG-2	SO4382	0.70	+2.5
4,577,810	-	fabG-2	SO4382	0.70	-2.6
4,577,887	+	fabG-2	SO4382	0.81	+2.4
4,577,887	+	fabG-2	SO4382	0.81	+0.2
4,577,887	+	fabG-2	SO4382	0.81	+0.6
4,577,887	+	fabG-2	SO4382	0.81	-0.8
4,577,895	-	fabG-2	SO4382	0.82	-1.9
4,577,895	-	fabG-2	SO4382	0.82	-1.7
4,578,014	+				-0.4
4,578,101	+				-0.5
4,578,137	-				+0.5