Strain Fitness in Shewanella oneidensis MR-1 around SO4179

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,350,140	+		SO4178	0.14	-0.5
4,350,157	-		SO4178	0.16	-2.1
4,350,157	-		SO4178	0.16	-1.2
4,350,200	-		SO4178	0.20	+0.2
4,350,226	+		SO4178	0.23	+0.3
4,350,275	-		SO4178	0.27	-0.0
4,350,281	-		SO4178	0.28	-1.5
4,350,281	-		SO4178	0.28	+0.7
4,350,281	-		SO4178	0.28	-0.0
4,350,281	-		SO4178	0.28	-2.1
4,350,281	-		SO4178	0.28	-0.0
4,350,281	-		SO4178	0.28	-1.1
4,350,305	-		SO4178	0.30	+1.0
4,350,337	+		SO4178	0.33	-0.2
4,350,345	-		SO4178	0.34	+0.3
4,350,354	-		SO4178	0.35	-0.3
4,350,392	-		SO4178	0.38	+0.9
4,350,424	+		SO4178	0.41	+0.1
4,350,553	+		SO4178	0.54	-1.5
4,350,599	+		SO4178	0.58	-0.1
4,350,622	+		SO4178	0.60	+0.0
4,350,739	+		SO4178	0.71	-0.0
4,350,741	+		SO4178	0.71	-0.7
4,350,824	+		SO4178	0.79	-0.9
4,350,832	-		SO4178	0.80	+0.3
4,350,869	+		SO4178	0.83	-0.2
4,350,889	-		SO4178	0.85	-0.7
4,350,915	+		SO4178	0.88	+0.4
4,350,915	-		SO4178	0.88	-0.2
4,350,944	+				-1.9
4,351,008	-				-0.8
4,351,020	-				-0.4
4,351,020	-				+0.2
4,351,073	+				-0.5
4,351,089	-				+1.8
4,351,093	+				-0.6
4,351,093	+				-1.1
4,351,101	-				-3.7
4,351,114	-				-2.3
4,351,154	-				-0.7
4,351,169	+		SO4179	0.10	+1.0
4,351,239	+		SO4179	0.16	+1.4
4,351,247	-		SO4179	0.17	-0.6
4,351,272	-		SO4179	0.19	-0.4
4,351,306	+		SO4179	0.22	-0.6
4,351,311	+		SO4179	0.22	-0.1
4,351,311	+		SO4179	0.22	-0.6
4,351,319	-		SO4179	0.23	-1.5
4,351,321	+		SO4179	0.23	-1.8
4,351,321	+		SO4179	0.23	-2.6
4,351,387	-		SO4179	0.28	+0.6
4,351,410	+		SO4179	0.30	-1.0
4,351,418	-		SO4179	0.31	-1.0
4,351,484	-		SO4179	0.36	-0.6
4,351,490	+		SO4179	0.37	-0.0
4,351,490	+		SO4179	0.37	+1.0
4,351,503	-		SO4179	0.38	+3.6
4,351,527	-		SO4179	0.40	+0.3
4,351,577	-		SO4179	0.44	+1.0
4,351,588	+		SO4179	0.45	-0.7
4,351,711	+		SO4179	0.55	+0.9
4,351,771	-		SO4179	0.60	+0.4
4,351,798	+		SO4179	0.62	-0.2
4,351,798	+		SO4179	0.62	-1.0
4,351,798	+		SO4179	0.62	+0.8
4,351,798	+		SO4179	0.62	-1.7
4,351,798	+		SO4179	0.62	+1.8
4,351,806	-		SO4179	0.63	-0.9
4,351,806	-		SO4179	0.63	-0.3
4,351,806	-		SO4179	0.63	-1.4
4,351,825	+		SO4179	0.65	+0.4
4,351,833	-		SO4179	0.65	-0.2
4,351,941	+		SO4179	0.74	+1.6
4,351,941	-		SO4179	0.74	-0.7
4,352,015	-		SO4179	0.80	-0.2
4,352,053	-		SO4179	0.83	-1.5
4,352,053	-		SO4179	0.83	+0.6
4,352,053	-		SO4179	0.83	-0.6
4,352,099	-		SO4179	0.87	-1.0
4,352,133	+				-0.7
4,352,165	+				-2.9
4,352,177	-				-0.2
4,352,191	+				+0.6
4,352,270	-				-1.6
4,352,411	+				-2.5
4,352,440	+				-1.5
4,352,448	-				-0.6
4,352,448	-				-1.0
4,352,448	-				-2.1
4,352,534	-		SO4180	0.12	+0.1
4,352,598	+		SO4180	0.17	+0.8
4,352,598	+		SO4180	0.17	-0.1
4,352,606	-		SO4180	0.17	+1.7
4,352,627	+		SO4180	0.19	+0.4
4,352,627	+		SO4180	0.19	+1.2
4,352,645	-		SO4180	0.20	+0.5
4,352,659	-		SO4180	0.21	-1.6
4,352,759	+		SO4180	0.28	+0.7
4,352,767	-		SO4180	0.29	-1.3
4,352,767	-		SO4180	0.29	-0.9
4,352,782	-		SO4180	0.30	+0.2
4,352,793	+		SO4180	0.31	+0.6
4,352,804	+		SO4180	0.31	-1.8
4,352,829	+		SO4180	0.33	+1.1
4,352,856	+		SO4180	0.35	-0.6
4,352,880	+		SO4180	0.37	-1.3
4,352,895	+		SO4180	0.38	-0.2
4,352,971	-		SO4180	0.43	-1.2
4,352,988	+		SO4180	0.45	+0.3
4,352,992	+		SO4180	0.45	-0.6
4,352,996	-		SO4180	0.45	-1.1
4,353,000	-		SO4180	0.46	-0.9
4,353,000	-		SO4180	0.46	-0.4
4,353,000	-		SO4180	0.46	+1.4
4,353,000	-		SO4180	0.46	-2.2
4,353,000	-		SO4180	0.46	-1.2
4,353,006	-		SO4180	0.46	-0.4
4,353,006	-		SO4180	0.46	-3.0
4,353,040	+		SO4180	0.48	-2.3
4,353,040	+		SO4180	0.48	-1.6
4,353,040	+		SO4180	0.48	-1.8
4,353,040	+		SO4180	0.48	-0.2
4,353,040	+		SO4180	0.48	-2.1
4,353,047	-		SO4180	0.49	-0.9
4,353,048	-		SO4180	0.49	-2.3
4,353,048	-		SO4180	0.49	-1.4
4,353,048	-		SO4180	0.49	-0.6
4,353,098	-		SO4180	0.53	+0.0
4,353,098	-		SO4180	0.53	-1.2
4,353,098	-		SO4180	0.53	-2.0
4,353,122	+		SO4180	0.54	+1.8
4,353,122	+		SO4180	0.54	-0.6
4,353,122	+		SO4180	0.54	-0.7
4,353,122	+		SO4180	0.54	-1.3
4,353,122	+		SO4180	0.54	-1.6
4,353,141	-		SO4180	0.56	+1.4
4,353,146	-		SO4180	0.56	-1.0
4,353,178	-		SO4180	0.58	+0.4