Strain Fitness in Shewanella oneidensis MR-1 around SO4101

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,260,341	+	mshQ	SO4100	0.75	-0.8
4,260,390	-	mshQ	SO4100	0.76	+0.3
4,260,528	-	mshQ	SO4100	0.80	+0.5
4,260,646	-	mshQ	SO4100	0.83	-0.2
4,260,653	-	mshQ	SO4100	0.83	-1.4
4,260,728	-	mshQ	SO4100	0.85	-0.6
4,260,768	+	mshQ	SO4100	0.86	-0.1
4,260,792	+	mshQ	SO4100	0.87	+1.0
4,260,806	+	mshQ	SO4100	0.87	-1.0
4,260,848	-	mshQ	SO4100	0.88	-0.7
4,260,872	-	mshQ	SO4100	0.89	-0.6
4,260,890	+	mshQ	SO4100	0.89	+0.4
4,260,925	-				-1.1
4,260,935	-				-1.7
4,260,939	+				-2.5
4,261,018	-				-0.4
4,261,036	+				-0.4
4,261,036	+				-1.2
4,261,036	+				-0.1
4,261,037	+				-1.2
4,261,037	+				-0.7
4,261,045	-				+0.8
4,261,045	-				-2.3
4,261,047	+				-0.7
4,261,047	+				-1.5
4,261,047	+				-1.1
4,261,047	+				-0.9
4,261,047	+				+2.3
4,261,055	-				-2.2
4,261,072	-				-0.2
4,261,104	+				+0.3
4,261,112	-				-1.1
4,261,112	-				-1.0
4,261,112	-				-0.8
4,261,112	-				-1.0
4,261,112	-				-1.8
4,261,112	-				-1.5
4,261,112	-				-0.1
4,261,112	-				-1.9
4,261,112	-				-0.7
4,261,161	-				-0.6
4,261,232	-				+1.1
4,261,244	+				-1.8
4,261,345	+	mshP	SO4101	0.13	-1.6
4,261,353	-	mshP	SO4101	0.15	-1.0
4,261,408	-	mshP	SO4101	0.27	-1.2
4,261,408	-	mshP	SO4101	0.27	-3.1
4,261,421	-	mshP	SO4101	0.30	-1.5
4,261,462	+	mshP	SO4101	0.39	-1.0
4,261,548	+	mshP	SO4101	0.57	-1.6
4,261,548	+	mshP	SO4101	0.57	-2.2
4,261,556	-	mshP	SO4101	0.59	-1.2
4,261,580	-	mshP	SO4101	0.64	-1.2
4,261,661	+	mshP	SO4101	0.82	-1.8
4,261,671	-	mshP	SO4101	0.84	-1.7
4,261,728	-				-1.4
4,261,845	+	mshO	SO4102	0.13	-2.7
4,261,853	-	mshO	SO4102	0.14	-0.6
4,261,947	+	mshO	SO4102	0.25	+0.3
4,261,955	-	mshO	SO4102	0.26	-1.0
4,261,957	+	mshO	SO4102	0.27	-0.9
4,262,029	+	mshO	SO4102	0.35	+0.3
4,262,071	-	mshO	SO4102	0.40	-0.9
4,262,090	-	mshO	SO4102	0.42	-1.3
4,262,104	-	mshO	SO4102	0.44	-0.8
4,262,139	-	mshO	SO4102	0.48	+1.3
4,262,146	+	mshO	SO4102	0.49	+1.3
4,262,146	+	mshO	SO4102	0.49	-1.3
4,262,148	+	mshO	SO4102	0.49	-0.3
4,262,156	-	mshO	SO4102	0.50	+2.0
4,262,156	-	mshO	SO4102	0.50	-0.7
4,262,156	-	mshO	SO4102	0.50	-0.5
4,262,156	-	mshO	SO4102	0.50	-0.5
4,262,156	-	mshO	SO4102	0.50	-2.8
4,262,156	-	mshO	SO4102	0.50	+0.4
4,262,156	-	mshO	SO4102	0.50	-3.8
4,262,173	+	mshO	SO4102	0.52	-1.5
4,262,350	+	mshO	SO4102	0.73	-0.4
4,262,350	+	mshO	SO4102	0.73	-0.4
4,262,350	+	mshO	SO4102	0.73	-1.5
4,262,350	+	mshO	SO4102	0.73	-1.4
4,262,350	+	mshO	SO4102	0.73	-0.5
4,262,350	+	mshO	SO4102	0.73	-0.7
4,262,350	+	mshO	SO4102	0.73	+0.3
4,262,350	+	mshO	SO4102	0.73	-1.2
4,262,350	+	mshO	SO4102	0.73	+0.2
4,262,350	+	mshO	SO4102	0.73	-2.0
4,262,350	+	mshO	SO4102	0.73	-0.4
4,262,350	+	mshO	SO4102	0.73	-1.9
4,262,350	+	mshO	SO4102	0.73	-0.9
4,262,350	+	mshO	SO4102	0.73	-1.8
4,262,358	-	mshO	SO4102	0.74	+0.3
4,262,358	-	mshO	SO4102	0.74	+0.1
4,262,358	-	mshO	SO4102	0.74	-0.7
4,262,358	-	mshO	SO4102	0.74	+1.1
4,262,358	-	mshO	SO4102	0.74	+0.0
4,262,358	-	mshO	SO4102	0.74	-1.3
4,262,358	-	mshO	SO4102	0.74	-0.0
4,262,358	-	mshO	SO4102	0.74	-0.8
4,262,358	-	mshO	SO4102	0.74	+0.1
4,262,358	-	mshO	SO4102	0.74	+1.0
4,262,358	-	mshO	SO4102	0.74	-0.3
4,262,358	-	mshO	SO4102	0.74	-1.1
4,262,358	-	mshO	SO4102	0.74	-0.0
4,262,358	-	mshO	SO4102	0.74	+0.3
4,262,358	-	mshO	SO4102	0.74	-1.1
4,262,358	-	mshO	SO4102	0.74	-0.4
4,262,358	-	mshO	SO4102	0.74	+0.7
4,262,358	-	mshO	SO4102	0.74	-0.1
4,262,358	-	mshO	SO4102	0.74	-1.2
4,262,358	-	mshO	SO4102	0.74	+0.6
4,262,358	-	mshO	SO4102	0.74	-0.4
4,262,367	+	mshO	SO4102	0.75	-2.2
4,262,483	-	mshO	SO4102	0.89	-1.4
4,262,517	-				-0.7
4,262,537	-				-0.7
4,262,559	-				-0.1
4,262,564	+				-0.6
4,262,566	+				-2.2
4,262,589	+				-0.2
4,262,635	+				+0.3
4,262,710	+	mshD	SO4103	0.23	-1.4
4,262,710	+	mshD	SO4103	0.23	-0.8
4,262,715	+	mshD	SO4103	0.24	-1.6
4,262,728	-	mshD	SO4103	0.26	-1.7
4,262,728	-	mshD	SO4103	0.26	+0.2