Strain Fitness in Shewanella oneidensis MR-1 around SO3792

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,942,592	+		SO3791	0.27	-1.1
3,942,615	+		SO3791	0.29	-1.3
3,942,621	-		SO3791	0.30	+0.2
3,942,623	-		SO3791	0.30	+2.7
3,942,623	-		SO3791	0.30	+2.1
3,942,638	-		SO3791	0.31	-2.1
3,942,786	-		SO3791	0.44	+0.3
3,942,786	-		SO3791	0.44	-0.8
3,942,842	-		SO3791	0.48	-1.4
3,942,851	+		SO3791	0.49	+0.6
3,942,930	+		SO3791	0.56	+0.3
3,942,938	-		SO3791	0.56	+0.9
3,942,965	+		SO3791	0.59	-1.9
3,943,009	+		SO3791	0.62	+0.6
3,943,009	+		SO3791	0.62	-0.3
3,943,016	-		SO3791	0.63	+1.9
3,943,077	+		SO3791	0.68	+0.3
3,943,085	-		SO3791	0.69	-0.4
3,943,085	-		SO3791	0.69	+0.7
3,943,239	+		SO3791	0.82	-0.9
3,943,239	-		SO3791	0.82	+1.4
3,943,269	+		SO3791	0.84	+1.1
3,943,294	-		SO3791	0.86	+1.2
3,943,311	+		SO3791	0.88	+0.7
3,943,595	+				-0.1
3,943,603	-				+1.7
3,943,603	-				-1.3
3,943,606	+				+1.3
3,943,630	-				+2.6
3,943,658	+				-1.4
3,943,687	+		SO3792	0.12	-3.1
3,943,687	+		SO3792	0.12	-2.0
3,943,748	-		SO3792	0.18	-0.4
3,943,834	-		SO3792	0.25	-0.8
3,943,974	-		SO3792	0.37	+0.1
3,944,025	+		SO3792	0.41	+0.7
3,944,025	+		SO3792	0.41	+2.7
3,944,033	-		SO3792	0.42	-0.6
3,944,084	+		SO3792	0.46	+2.7
3,944,094	+		SO3792	0.47	-0.4
3,944,102	-		SO3792	0.48	-0.6
3,944,102	-		SO3792	0.48	-0.3
3,944,130	-		SO3792	0.50	-2.7
3,944,189	-		SO3792	0.55	-1.8
3,944,301	-		SO3792	0.65	+0.5
3,944,302	-		SO3792	0.65	+0.8
3,944,451	+		SO3792	0.78	-0.5
3,944,451	+		SO3792	0.78	+0.1
3,944,625	-				-2.0
3,944,643	+				+0.5
3,944,643	+				-1.2
3,944,643	+				+0.1
3,944,748	+				-1.6
3,944,754	-		SO3793	0.12	-2.1
3,944,802	-		SO3793	0.26	-1.1
3,944,802	-		SO3793	0.26	+0.9
3,944,825	-		SO3793	0.34	-0.9
3,944,865	+		SO3793	0.46	-0.2
3,944,873	-		SO3793	0.49	+0.0
3,945,120	-				-1.8
3,945,267	-				-1.0
3,945,275	-				-0.7
3,945,291	+				+1.7
3,945,397	+				-0.8
3,945,405	+				+0.3
3,945,415	-		SO3794	0.10	-0.4
3,945,523	+		SO3794	0.15	+0.4
3,945,635	-		SO3794	0.20	+0.1
3,945,684	+		SO3794	0.22	+1.3
3,945,707	+		SO3794	0.23	-1.7
3,945,707	+		SO3794	0.23	-0.7