Strain Fitness in Shewanella oneidensis MR-1 around SO3737

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,880,557	-	cysH	SO3736	0.52	+2.7
3,880,582	+	cysH	SO3736	0.56	+1.7
3,880,582	+	cysH	SO3736	0.56	+1.7
3,880,610	-	cysH	SO3736	0.59	+2.7
3,880,947	+				+1.1
3,881,101	-				-3.2
3,881,774	-	cysI	SO3737	0.48	-1.0
3,881,815	-	cysI	SO3737	0.50	-2.2
3,881,934	-	cysI	SO3737	0.57	+0.7
3,882,169	+	cysI	SO3737	0.71	-0.1
3,882,179	-	cysI	SO3737	0.72	-2.0
3,882,179	-	cysI	SO3737	0.72	-1.7
3,882,272	+	cysI	SO3737	0.77	+1.1
3,882,280	-	cysI	SO3737	0.78	-0.8
3,882,393	-	cysI	SO3737	0.84	-2.0
3,882,416	-	cysI	SO3737	0.86	-4.2
3,882,678	-				+0.0
3,882,765	-				-2.1
3,882,806	-				-2.2
3,882,847	-				-0.9
3,882,847	-				-0.3
3,882,927	-	cysJ	SO3738	0.11	-0.3
3,882,927	-	cysJ	SO3738	0.11	-0.3
3,883,497	+	cysJ	SO3738	0.42	+2.7
3,883,559	-	cysJ	SO3738	0.45	-1.2
3,883,574	-	cysJ	SO3738	0.46	-1.4
3,883,574	-	cysJ	SO3738	0.46	+0.2
3,883,658	+	cysJ	SO3738	0.51	+2.7