Strain Fitness in Shewanella oneidensis MR-1 around SO3672

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,824,563	-	tonB1	SO3670	0.85	-1.0
3,824,575	-	tonB1	SO3670	0.86	-1.9
3,824,576	-	tonB1	SO3670	0.86	-0.3
3,824,581	+	tonB1	SO3670	0.87	+2.0
3,824,631	+				+0.5
3,824,656	+				+0.5
3,824,656	+				+0.7
3,824,705	+				+1.6
3,824,705	+				+0.2
3,824,713	-				+0.4
3,824,715	-				-0.4
3,824,803	-				-2.5
3,824,803	-				-1.1
3,824,831	+	exbB1	SO3671	0.11	+0.2
3,824,834	-	exbB1	SO3671	0.11	-0.2
3,824,997	+	exbB1	SO3671	0.32	+0.9
3,825,035	+	exbB1	SO3671	0.37	-1.4
3,825,074	-	exbB1	SO3671	0.42	+0.1
3,825,103	-	exbB1	SO3671	0.46	-0.1
3,825,103	-	exbB1	SO3671	0.46	-0.9
3,825,172	+	exbB1	SO3671	0.54	-1.0
3,825,196	-	exbB1	SO3671	0.57	-1.0
3,825,229	-	exbB1	SO3671	0.62	+0.5
3,825,243	+	exbB1	SO3671	0.63	+0.8
3,825,243	+	exbB1	SO3671	0.63	-0.6
3,825,243	+	exbB1	SO3671	0.63	+1.0
3,825,251	-	exbB1	SO3671	0.64	-1.5
3,825,251	-	exbB1	SO3671	0.64	+1.2
3,825,251	-	exbB1	SO3671	0.64	-1.1
3,825,256	-	exbB1	SO3671	0.65	-0.4
3,825,258	+	exbB1	SO3671	0.65	+0.5
3,825,304	-	exbB1	SO3671	0.71	-0.3
3,825,388	-	exbB1	SO3671	0.82	-1.3
3,825,439	-	exbB1	SO3671	0.89	-0.7
3,825,441	+	exbB1	SO3671	0.89	+1.1
3,825,478	+				+0.4
3,825,486	+				+1.3
3,825,527	+				-1.4
3,825,532	+				-0.7
3,825,546	+				+0.5
3,825,554	-				+0.0
3,825,639	+	exbD1	SO3672	0.26	-2.5
3,825,837	+	exbD1	SO3672	0.71	-2.0
3,825,962	+				-0.3
3,825,963	+				-1.2
3,825,971	-				-1.4
3,825,993	-				-1.2
3,825,994	+				+1.9
3,826,040	+				-1.7
3,826,040	+				+1.3
3,826,061	+				+0.4
3,826,296	+	hmuT	SO3673	0.25	-0.3
3,826,348	+	hmuT	SO3673	0.31	+0.7
3,826,363	+	hmuT	SO3673	0.32	-0.1
3,826,363	+	hmuT	SO3673	0.32	+0.2
3,826,363	+	hmuT	SO3673	0.32	+2.7
3,826,363	+	hmuT	SO3673	0.32	+0.8
3,826,363	+	hmuT	SO3673	0.32	+1.6
3,826,363	+	hmuT	SO3673	0.32	+1.2
3,826,363	+	hmuT	SO3673	0.32	+0.6
3,826,363	+	hmuT	SO3673	0.32	-0.6
3,826,363	+	hmuT	SO3673	0.32	+1.4
3,826,363	+	hmuT	SO3673	0.32	-0.1
3,826,363	+	hmuT	SO3673	0.32	+0.1
3,826,363	+	hmuT	SO3673	0.32	-2.1
3,826,363	+	hmuT	SO3673	0.32	-0.6
3,826,363	+	hmuT	SO3673	0.32	-0.3
3,826,363	+	hmuT	SO3673	0.32	-0.1
3,826,363	+	hmuT	SO3673	0.32	-0.0
3,826,363	+	hmuT	SO3673	0.32	+1.6
3,826,363	+	hmuT	SO3673	0.32	-2.2
3,826,363	+	hmuT	SO3673	0.32	+0.7
3,826,363	+	hmuT	SO3673	0.32	-1.5
3,826,363	+	hmuT	SO3673	0.32	-0.3
3,826,363	+	hmuT	SO3673	0.32	-0.6
3,826,366	-	hmuT	SO3673	0.32	+0.1
3,826,371	-	hmuT	SO3673	0.33	-0.6
3,826,371	-	hmuT	SO3673	0.33	+0.8
3,826,371	-	hmuT	SO3673	0.33	-1.3
3,826,371	-	hmuT	SO3673	0.33	+1.7
3,826,371	-	hmuT	SO3673	0.33	-0.1
3,826,371	-	hmuT	SO3673	0.33	+0.7
3,826,371	-	hmuT	SO3673	0.33	-1.3
3,826,371	-	hmuT	SO3673	0.33	+0.0
3,826,371	-	hmuT	SO3673	0.33	+0.4
3,826,371	-	hmuT	SO3673	0.33	-1.3
3,826,371	-	hmuT	SO3673	0.33	+0.6
3,826,371	-	hmuT	SO3673	0.33	+1.0
3,826,371	-	hmuT	SO3673	0.33	-1.2
3,826,371	-	hmuT	SO3673	0.33	-0.0
3,826,371	-	hmuT	SO3673	0.33	-0.4
3,826,371	-	hmuT	SO3673	0.33	-2.4
3,826,371	-	hmuT	SO3673	0.33	+0.5
3,826,371	-	hmuT	SO3673	0.33	+0.1
3,826,371	-	hmuT	SO3673	0.33	-0.8
3,826,371	-	hmuT	SO3673	0.33	+2.0
3,826,371	-	hmuT	SO3673	0.33	+0.8
3,826,371	-	hmuT	SO3673	0.33	+0.2
3,826,371	-				+0.3
3,826,381	+	hmuT	SO3673	0.34	-0.3
3,826,425	-	hmuT	SO3673	0.39	-0.7
3,826,433	+	hmuT	SO3673	0.40	+0.3
3,826,441	-	hmuT	SO3673	0.40	-0.2
3,826,443	+	hmuT	SO3673	0.41	-0.7
3,826,507	-	hmuT	SO3673	0.47	+0.5
3,826,520	+	hmuT	SO3673	0.49	-2.7
3,826,606	-	hmuT	SO3673	0.58	+1.3
3,826,606	-	hmuT	SO3673	0.58	+0.9
3,826,721	+	hmuT	SO3673	0.70	-0.9
3,826,721	+	hmuT	SO3673	0.70	-1.2
3,826,728	+	hmuT	SO3673	0.70	-1.3
3,826,841	-	hmuT	SO3673	0.82	-0.6
3,826,903	+	hmuT	SO3673	0.89	+0.8
3,826,911	-	hmuT	SO3673	0.90	-1.9
3,826,938	-				-1.4