Strain Fitness in Shewanella oneidensis MR-1 around SO3664

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,815,620	+		SO3660.1	0.83	-0.0
3,815,649	+		SO3660.1	0.85	+0.3
3,815,802	-				+0.7
3,815,809	-				-0.1
3,815,809	-				-0.3
3,815,841	+				+0.1
3,815,849	-				+3.2
3,815,870	-		SO_3662	0.12	+1.0
3,815,894	-		SO_3662	0.19	-1.5
3,815,970	+		SO_3662	0.39	+0.5
3,816,043	+		SO_3662	0.59	-0.5
3,816,077	+		SO_3662	0.68	-2.0
3,816,077	+		SO_3662	0.68	+0.8
3,816,164	+				+1.4
3,816,188	+				+0.1
3,816,313	+				-0.9
3,816,313	+				-0.6
3,816,314	-				-0.7
3,816,316	-				+0.3
3,816,337	+				+1.1
3,816,352	+				+0.1
3,816,358	+				-1.0
3,816,360	-				+0.7
3,816,384	+				-0.0
3,816,384	+				-1.2
3,816,392	-				+0.7
3,816,392	-				-0.6
3,816,430	+				-0.4
3,816,468	+				-3.3
3,816,482	+				-1.2
3,816,483	+				+1.3
3,816,491	-				+0.8
3,816,608	+				+1.7
3,816,627	+				+0.0
3,816,632	+				-0.5
3,816,808	+	fadD-2	SO3664	0.16	+0.3
3,816,827	+	fadD-2	SO3664	0.17	+1.3
3,816,827	+	fadD-2	SO3664	0.17	+0.2
3,816,827	+	fadD-2	SO3664	0.17	-0.1
3,816,828	+	fadD-2	SO3664	0.17	-2.1
3,816,836	-	fadD-2	SO3664	0.17	-0.9
3,816,948	-	fadD-2	SO3664	0.24	-0.9
3,816,963	+	fadD-2	SO3664	0.25	+0.4
3,816,971	-	fadD-2	SO3664	0.26	-0.8
3,817,018	+	fadD-2	SO3664	0.29	-1.5
3,817,073	+	fadD-2	SO3664	0.32	+1.0
3,817,079	+	fadD-2	SO3664	0.32	-0.0
3,817,087	-	fadD-2	SO3664	0.33	-1.7
3,817,131	-	fadD-2	SO3664	0.36	-1.4
3,817,158	+	fadD-2	SO3664	0.37	-0.3
3,817,158	+	fadD-2	SO3664	0.37	-0.3
3,817,166	-	fadD-2	SO3664	0.38	-0.2
3,817,189	-	fadD-2	SO3664	0.39	+0.1
3,817,230	-	fadD-2	SO3664	0.42	+0.1
3,817,289	-	fadD-2	SO3664	0.46	+1.1
3,817,336	-	fadD-2	SO3664	0.49	+1.7
3,817,405	+	fadD-2	SO3664	0.53	+0.6
3,817,405	+	fadD-2	SO3664	0.53	-1.0
3,817,413	-	fadD-2	SO3664	0.53	+0.1
3,817,556	+	fadD-2	SO3664	0.62	-0.7
3,817,615	-	fadD-2	SO3664	0.66	-0.2
3,817,685	+	fadD-2	SO3664	0.70	-0.6
3,817,695	+	fadD-2	SO3664	0.71	-0.4
3,817,700	+	fadD-2	SO3664	0.71	-0.6
3,817,706	+	fadD-2	SO3664	0.72	-2.4
3,817,731	+	fadD-2	SO3664	0.73	-0.8
3,817,979	+	fadD-2	SO3664	0.89	-0.9
3,817,979	+	fadD-2	SO3664	0.89	-1.0
3,817,979	+	fadD-2	SO3664	0.89	-1.9
3,818,069	+				-0.9
3,818,077	-				-0.6
3,818,118	-				-0.2
3,818,123	-				-0.4
3,818,238	-				+0.8
3,818,281	-				+0.9
3,818,349	-				+0.2
3,818,406	+		SO3665	0.11	-0.1
3,818,463	+		SO3665	0.14	+0.6
3,818,689	-		SO3665	0.26	-0.8
3,818,725	+		SO3665	0.28	-1.2
3,818,869	-		SO3665	0.37	-1.8