Strain Fitness in Shewanella oneidensis MR-1 around SO3506

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,656,735	-	nagA	SO3505	0.18	-1.2
3,656,748	+	nagA	SO3505	0.19	-1.2
3,656,815	+	nagA	SO3505	0.25	-1.6
3,656,825	+	nagA	SO3505	0.26	+0.0
3,656,957	+	nagA	SO3505	0.37	-0.1
3,656,970	-	nagA	SO3505	0.39	+0.7
3,656,972	-	nagA	SO3505	0.39	-0.4
3,657,053	-	nagA	SO3505	0.46	-1.7
3,657,087	+	nagA	SO3505	0.49	-1.0
3,657,107	+	nagA	SO3505	0.51	+0.1
3,657,107	+	nagA	SO3505	0.51	-1.4
3,657,115	-	nagA	SO3505	0.51	+1.4
3,657,115	-	nagA	SO3505	0.51	+0.4
3,657,119	+	nagA	SO3505	0.52	-0.3
3,657,160	-	nagA	SO3505	0.55	+0.1
3,657,160	-	nagA	SO3505	0.55	+1.4
3,657,246	+	nagA	SO3505	0.63	-1.2
3,657,367	+	nagA	SO3505	0.73	+2.1
3,657,477	+	nagA	SO3505	0.83	-2.9
3,657,568	+				-1.4
3,657,576	-				+1.7
3,657,593	+				+0.1
3,657,601	-				-0.4
3,657,710	+				-0.4
3,657,726	-				-1.2
3,657,918	+		SO3506	0.21	+1.1
3,657,926	-		SO3506	0.21	+0.1
3,658,004	+		SO3506	0.29	-0.1
3,658,012	-		SO3506	0.30	-0.6
3,658,012	-		SO3506	0.30	+0.5
3,658,035	+		SO3506	0.32	+0.3
3,658,073	+		SO3506	0.36	+0.7
3,658,073	+		SO3506	0.36	+0.6
3,658,073	+		SO3506	0.36	-0.7
3,658,073	+		SO3506	0.36	+0.9
3,658,074	-		SO3506	0.36	+0.4
3,658,080	-		SO3506	0.37	-0.4
3,658,109	+		SO3506	0.40	+0.4
3,658,135	-		SO3506	0.42	+2.1
3,658,257	+		SO3506	0.54	+0.4
3,658,343	-		SO3506	0.63	-0.2
3,658,497	-		SO3506	0.78	-0.4
3,658,684	-				-0.0
3,658,799	-				-1.3
3,658,817	-				+1.3
3,658,822	-				-0.0
3,658,845	-				-1.3
3,658,894	-		SO3507	0.13	-0.4
3,658,932	-		SO3507	0.17	+1.6
3,658,937	-		SO3507	0.18	+0.7
3,659,139	-		SO3507	0.40	-0.4
3,659,187	+		SO3507	0.45	-0.8
3,659,208	-		SO3507	0.48	-1.3
3,659,216	-		SO3507	0.49	-1.2
3,659,216	-		SO3507	0.49	-0.5
3,659,216	-		SO3507	0.49	+0.6
3,659,216	-		SO3507	0.49	+1.0
3,659,249	+		SO3507	0.52	+1.1
3,659,257	-		SO3507	0.53	+0.3
3,659,438	+		SO3507	0.73	-2.9
3,659,571	-		SO3507	0.88	-0.7
3,659,618	-				-0.6
3,659,676	-				+0.4
3,659,707	+				+1.3