Strain Fitness in Shewanella oneidensis MR-1 around SO3460

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,604,865	+		SO3458	0.23	+0.4
3,604,867	+		SO3458	0.24	+0.3
3,604,867	+		SO3458	0.24	-0.2
3,604,873	-		SO3458	0.25	+0.2
3,604,873	-		SO3458	0.25	+0.5
3,604,877	+		SO3458	0.26	-0.2
3,604,895	-		SO3458	0.28	+0.8
3,604,926	+		SO3458	0.34	-1.2
3,604,934	-		SO3458	0.35	+0.5
3,604,962	+		SO3458	0.40	+1.5
3,604,962	+		SO3458	0.40	-0.5
3,604,962	+		SO3458	0.40	-2.2
3,604,970	-		SO3458	0.41	+0.2
3,604,970	-		SO3458	0.41	-0.2
3,605,159	-		SO3458	0.72	-1.9
3,605,172	+		SO3458	0.75	+1.2
3,605,371	-				+1.9
3,605,652	-		SO3459	0.72	+0.0
3,605,741	+				-0.6
3,605,748	-				+0.8
3,605,750	+				-0.5
3,605,791	-				-0.4
3,605,806	-		SO3460	0.10	-0.4
3,605,874	-		SO3460	0.18	+0.2
3,605,971	-		SO3460	0.28	+1.5
3,605,995	+		SO3460	0.31	+0.2
3,606,003	-		SO3460	0.32	+0.3
3,606,080	-		SO3460	0.41	-0.3
3,606,080	-		SO3460	0.41	-0.7
3,606,080	-		SO3460	0.41	-1.2
3,606,131	+		SO3460	0.46	+0.6
3,606,131	+		SO3460	0.46	-1.1
3,606,139	-		SO3460	0.47	-0.9
3,606,149	+		SO3460	0.48	-0.5
3,606,254	-		SO3460	0.60	-1.3
3,606,341	-		SO3460	0.70	+0.6
3,606,416	-		SO3460	0.78	+0.3
3,606,491	+		SO3460	0.86	+0.4
3,606,499	-		SO3460	0.87	-0.6
3,606,499	-		SO3460	0.87	+0.2
3,606,503	+		SO3460	0.88	-1.7
3,606,535	-				-0.4
3,606,646	-				+0.3
3,606,735	-				-0.8
3,606,735	-				-0.7
3,607,026	+		SO3461	0.14	-1.2
3,607,240	-		SO3461	0.37	+0.7
3,607,409	+		SO3461	0.54	-0.4
3,607,498	-		SO3461	0.63	+0.3
3,607,498	-		SO3461	0.63	+1.1
3,607,539	-		SO3461	0.68	+1.0