Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_3457 and SO3458 overlap by 26 nucleotides SO3458 and SO3459 are separated by 155 nucleotides SO3459 and SO3460 overlap by 4 nucleotides SO3460 and SO3461 are separated by 274 nucleotides
SO_3457: SO_3457 - hybrid sensory histidine kinase BarA (RefSeq), at 3,601,942 to 3,604,749
_3457
SO3458: SO3458 - conserved hypothetical protein (NCBI ptt file), at 3,604,724 to 3,605,323
SO3458
SO3459: SO3459 - hypothetical protein (NCBI ptt file), at 3,605,479 to 3,605,718
SO3459
SO3460: SO3460 - transcriptional regulator, LysR family (NCBI ptt file), at 3,605,715 to 3,606,614
SO3460
SO3461: SO3461 - Fatty acid transporter (from data) , at 3,606,889 to 3,607,848
SO3461
Position (kb)
3605
3606
3607 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3604.865 kb on + strand, within SO3458 at 3604.867 kb on + strand, within SO3458 at 3604.867 kb on + strand, within SO3458 at 3604.873 kb on - strand, within SO3458 at 3604.873 kb on - strand, within SO3458 at 3604.877 kb on + strand, within SO3458 at 3604.895 kb on - strand, within SO3458 at 3604.926 kb on + strand, within SO3458 at 3604.934 kb on - strand, within SO3458 at 3604.962 kb on + strand, within SO3458 at 3604.962 kb on + strand, within SO3458 at 3604.962 kb on + strand, within SO3458 at 3604.970 kb on - strand, within SO3458 at 3604.970 kb on - strand, within SO3458 at 3605.159 kb on - strand, within SO3458 at 3605.172 kb on + strand, within SO3458 at 3605.371 kb on - strand at 3605.652 kb on - strand, within SO3459 at 3605.741 kb on + strand at 3605.748 kb on - strand at 3605.750 kb on + strand at 3605.791 kb on - strand at 3605.806 kb on - strand, within SO3460 at 3605.874 kb on - strand, within SO3460 at 3605.971 kb on - strand, within SO3460 at 3605.995 kb on + strand, within SO3460 at 3606.003 kb on - strand, within SO3460 at 3606.080 kb on - strand, within SO3460 at 3606.080 kb on - strand, within SO3460 at 3606.080 kb on - strand, within SO3460 at 3606.131 kb on + strand, within SO3460 at 3606.131 kb on + strand, within SO3460 at 3606.139 kb on - strand, within SO3460 at 3606.149 kb on + strand, within SO3460 at 3606.254 kb on - strand, within SO3460 at 3606.341 kb on - strand, within SO3460 at 3606.416 kb on - strand, within SO3460 at 3606.491 kb on + strand, within SO3460 at 3606.499 kb on - strand, within SO3460 at 3606.499 kb on - strand, within SO3460 at 3606.503 kb on + strand, within SO3460 at 3606.535 kb on - strand at 3606.646 kb on - strand at 3606.735 kb on - strand at 3606.735 kb on - strand at 3607.026 kb on + strand, within SO3461 at 3607.240 kb on - strand, within SO3461 at 3607.409 kb on + strand, within SO3461 at 3607.498 kb on - strand, within SO3461 at 3607.498 kb on - strand, within SO3461 at 3607.539 kb on - strand, within SO3461
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 3,604,865 + SO3458 0.23 +0.4 3,604,867 + SO3458 0.24 +0.3 3,604,867 + SO3458 0.24 -0.2 3,604,873 - SO3458 0.25 +0.2 3,604,873 - SO3458 0.25 +0.5 3,604,877 + SO3458 0.26 -0.2 3,604,895 - SO3458 0.28 +0.8 3,604,926 + SO3458 0.34 -1.2 3,604,934 - SO3458 0.35 +0.5 3,604,962 + SO3458 0.40 +1.5 3,604,962 + SO3458 0.40 -0.5 3,604,962 + SO3458 0.40 -2.2 3,604,970 - SO3458 0.41 +0.2 3,604,970 - SO3458 0.41 -0.2 3,605,159 - SO3458 0.72 -1.9 3,605,172 + SO3458 0.75 +1.2 3,605,371 - +1.9 3,605,652 - SO3459 0.72 +0.0 3,605,741 + -0.6 3,605,748 - +0.8 3,605,750 + -0.5 3,605,791 - -0.4 3,605,806 - SO3460 0.10 -0.4 3,605,874 - SO3460 0.18 +0.2 3,605,971 - SO3460 0.28 +1.5 3,605,995 + SO3460 0.31 +0.2 3,606,003 - SO3460 0.32 +0.3 3,606,080 - SO3460 0.41 -0.3 3,606,080 - SO3460 0.41 -0.7 3,606,080 - SO3460 0.41 -1.2 3,606,131 + SO3460 0.46 +0.6 3,606,131 + SO3460 0.46 -1.1 3,606,139 - SO3460 0.47 -0.9 3,606,149 + SO3460 0.48 -0.5 3,606,254 - SO3460 0.60 -1.3 3,606,341 - SO3460 0.70 +0.6 3,606,416 - SO3460 0.78 +0.3 3,606,491 + SO3460 0.86 +0.4 3,606,499 - SO3460 0.87 -0.6 3,606,499 - SO3460 0.87 +0.2 3,606,503 + SO3460 0.88 -1.7 3,606,535 - -0.4 3,606,646 - +0.3 3,606,735 - -0.8 3,606,735 - -0.7 3,607,026 + SO3461 0.14 -1.2 3,607,240 - SO3461 0.37 +0.7 3,607,409 + SO3461 0.54 -0.4 3,607,498 - SO3461 0.63 +0.3 3,607,498 - SO3461 0.63 +1.1 3,607,539 - SO3461 0.68 +1.0
Or see this region's nucleotide sequence