Strain Fitness in Shewanella oneidensis MR-1 around SO_3457

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,600,944	+		SO3456	0.34	-2.7
3,600,947	-		SO3456	0.34	-3.0
3,600,949	+		SO3456	0.34	-0.6
3,600,949	+		SO3456	0.34	-2.7
3,600,949	+		SO3456	0.34	-1.6
3,600,957	-		SO3456	0.35	-0.8
3,600,957	-		SO3456	0.35	-1.6
3,600,991	+		SO3456	0.37	-0.5
3,600,996	+		SO3456	0.37	-2.7
3,601,004	-		SO3456	0.38	-1.0
3,601,070	+		SO3456	0.43	-1.5
3,601,078	-		SO3456	0.44	-1.9
3,601,174	-		SO3456	0.51	-1.7
3,601,307	+		SO3456	0.61	+0.7
3,601,355	-		SO3456	0.64	+0.7
3,601,382	-		SO3456	0.66	-1.6
3,601,461	-		SO3456	0.72	-3.0
3,601,483	-		SO3456	0.74	-3.0
3,601,740	-				-2.9
3,601,790	+				-2.0
3,601,798	-				-1.0
3,601,920	-				-1.1
3,601,939	+				-1.4
3,601,939	+				-3.0
3,601,951	+				-0.2
3,602,091	+				-0.7
3,602,137	-				-1.8
3,602,137	-				-0.3
3,602,147	-				-0.1
3,602,213	-				-2.1
3,602,214	-				+0.0
3,602,342	+		SO_3457	0.14	-1.5
3,602,342	+		SO_3457	0.14	-1.8
3,602,342	+		SO_3457	0.14	-0.8
3,602,342	+		SO_3457	0.14	-1.8
3,602,342	+		SO_3457	0.14	+0.7
3,602,350	-		SO_3457	0.15	-1.3
3,602,350	-		SO_3457	0.15	-1.1
3,602,350	-		SO_3457	0.15	-1.4
3,602,350	-		SO_3457	0.15	-1.9
3,602,388	+		SO_3457	0.16	-0.1
3,602,492	-		SO_3457	0.20	-1.9
3,602,539	-		SO_3457	0.21	-1.6
3,602,550	-		SO_3457	0.22	+0.0
3,602,593	-		SO_3457	0.23	-0.3
3,602,758	-		SO_3457	0.29	-0.3
3,602,768	+		SO_3457	0.29	-0.7
3,602,776	-		SO_3457	0.30	-1.9
3,602,776	-		SO_3457	0.30	+0.7
3,602,867	+		SO_3457	0.33	-2.1
3,602,875	-		SO_3457	0.33	-1.5
3,602,886	+		SO_3457	0.34	-1.7
3,602,892	-		SO_3457	0.34	-0.7
3,602,894	-		SO_3457	0.34	-0.1
3,602,894	-		SO_3457	0.34	-1.3
3,602,941	+		SO_3457	0.36	-0.8
3,602,955	+		SO_3457	0.36	-0.7
3,602,978	+		SO_3457	0.37	-0.3
3,603,032	-		SO_3457	0.39	+0.2
3,603,117	+		SO_3457	0.42	+1.7
3,603,117	+		SO_3457	0.42	-0.4
3,603,117	+		SO_3457	0.42	-3.0
3,603,117	+		SO_3457	0.42	-0.6
3,603,117	+		SO_3457	0.42	-1.6
3,603,117	+		SO_3457	0.42	+0.2
3,603,117	+		SO_3457	0.42	-1.9
3,603,117	+		SO_3457	0.42	-0.3
3,603,117	+		SO_3457	0.42	-3.1
3,603,117	+		SO_3457	0.42	-2.0
3,603,117	+		SO_3457	0.42	-1.1
3,603,125	-		SO_3457	0.42	+0.2
3,603,125	-		SO_3457	0.42	-1.6
3,603,310	+		SO_3457	0.49	-0.3
3,603,383	-		SO_3457	0.51	-1.7
3,603,412	+		SO_3457	0.52	-2.2
3,603,420	-		SO_3457	0.53	-2.3
3,603,593	+		SO_3457	0.59	+0.2
3,603,609	-		SO_3457	0.59	+0.7
3,603,747	-		SO_3457	0.64	+0.4
3,603,786	+		SO_3457	0.66	-0.3
3,603,855	+		SO_3457	0.68	-1.9
3,603,860	+		SO_3457	0.68	+0.7
3,603,863	-		SO_3457	0.68	-1.6
3,603,923	-		SO_3457	0.71	-1.6
3,603,923	-		SO_3457	0.71	-3.2
3,603,949	+		SO_3457	0.71	-2.1
3,603,950	-		SO_3457	0.72	-1.1
3,603,956	+		SO_3457	0.72	-2.3
3,603,957	-		SO_3457	0.72	-0.3
3,604,099	-		SO_3457	0.77	-0.3
3,604,115	+		SO_3457	0.77	+1.7
3,604,164	-		SO_3457	0.79	-2.1
3,604,208	-		SO_3457	0.81	-0.2
3,604,417	+		SO_3457	0.88	-1.2
3,604,431	-		SO_3457	0.89	-0.6
3,604,515	+				-2.6
3,604,515	+				+1.2
3,604,523	-				+1.2
3,604,523	-				+0.4
3,604,561	+				-1.6
3,604,565	+				+0.2
3,604,865	+		SO3458	0.23	+0.4
3,604,867	+		SO3458	0.24	+0.3
3,604,867	+		SO3458	0.24	-0.2
3,604,873	-		SO3458	0.25	+0.2
3,604,873	-		SO3458	0.25	+0.5
3,604,877	+		SO3458	0.26	-0.2
3,604,895	-		SO3458	0.28	+0.8
3,604,926	+		SO3458	0.34	-1.2
3,604,934	-		SO3458	0.35	+0.5
3,604,962	+		SO3458	0.40	+1.5
3,604,962	+		SO3458	0.40	-0.5
3,604,962	+		SO3458	0.40	-2.2
3,604,970	-		SO3458	0.41	+0.2
3,604,970	-		SO3458	0.41	-0.2
3,605,159	-		SO3458	0.72	-1.9
3,605,172	+		SO3458	0.75	+1.2
3,605,371	-				+1.9
3,605,652	-		SO3459	0.72	+0.0
3,605,741	+				-0.6
3,605,748	-				+0.8