Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3456 and SO_3457 are separated by 102 nucleotides SO_3457 and SO3458 overlap by 26 nucleotides SO3458 and SO3459 are separated by 155 nucleotides SO3459 and SO3460 overlap by 4 nucleotides
SO3456: SO3456 - RNA methyltransferase, TrmA family (NCBI ptt file), at 3,600,490 to 3,601,839
SO3456
SO_3457: SO_3457 - hybrid sensory histidine kinase BarA (RefSeq), at 3,601,942 to 3,604,749
_3457
SO3458: SO3458 - conserved hypothetical protein (NCBI ptt file), at 3,604,724 to 3,605,323
SO3458
SO3459: SO3459 - hypothetical protein (NCBI ptt file), at 3,605,479 to 3,605,718
SO3459
SO3460: SO3460 - transcriptional regulator, LysR family (NCBI ptt file), at 3,605,715 to 3,606,614
SO3460
Position (kb)
3601
3602
3603
3604
3605 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3600.944 kb on + strand, within SO3456 at 3600.947 kb on - strand, within SO3456 at 3600.949 kb on + strand, within SO3456 at 3600.949 kb on + strand, within SO3456 at 3600.949 kb on + strand, within SO3456 at 3600.957 kb on - strand, within SO3456 at 3600.957 kb on - strand, within SO3456 at 3600.991 kb on + strand, within SO3456 at 3600.996 kb on + strand, within SO3456 at 3601.004 kb on - strand, within SO3456 at 3601.070 kb on + strand, within SO3456 at 3601.078 kb on - strand, within SO3456 at 3601.174 kb on - strand, within SO3456 at 3601.307 kb on + strand, within SO3456 at 3601.355 kb on - strand, within SO3456 at 3601.382 kb on - strand, within SO3456 at 3601.461 kb on - strand, within SO3456 at 3601.483 kb on - strand, within SO3456 at 3601.740 kb on - strand at 3601.790 kb on + strand at 3601.798 kb on - strand at 3601.920 kb on - strand at 3601.939 kb on + strand at 3601.939 kb on + strand at 3601.951 kb on + strand at 3602.091 kb on + strand at 3602.137 kb on - strand at 3602.137 kb on - strand at 3602.147 kb on - strand at 3602.213 kb on - strand at 3602.214 kb on - strand at 3602.342 kb on + strand, within SO_3457 at 3602.342 kb on + strand, within SO_3457 at 3602.342 kb on + strand, within SO_3457 at 3602.342 kb on + strand, within SO_3457 at 3602.342 kb on + strand, within SO_3457 at 3602.350 kb on - strand, within SO_3457 at 3602.350 kb on - strand, within SO_3457 at 3602.350 kb on - strand, within SO_3457 at 3602.350 kb on - strand, within SO_3457 at 3602.388 kb on + strand, within SO_3457 at 3602.492 kb on - strand, within SO_3457 at 3602.539 kb on - strand, within SO_3457 at 3602.550 kb on - strand, within SO_3457 at 3602.593 kb on - strand, within SO_3457 at 3602.758 kb on - strand, within SO_3457 at 3602.768 kb on + strand, within SO_3457 at 3602.776 kb on - strand, within SO_3457 at 3602.776 kb on - strand, within SO_3457 at 3602.867 kb on + strand, within SO_3457 at 3602.875 kb on - strand, within SO_3457 at 3602.886 kb on + strand, within SO_3457 at 3602.892 kb on - strand, within SO_3457 at 3602.894 kb on - strand, within SO_3457 at 3602.894 kb on - strand, within SO_3457 at 3602.941 kb on + strand, within SO_3457 at 3602.955 kb on + strand, within SO_3457 at 3602.978 kb on + strand, within SO_3457 at 3603.032 kb on - strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.117 kb on + strand, within SO_3457 at 3603.125 kb on - strand, within SO_3457 at 3603.125 kb on - strand, within SO_3457 at 3603.310 kb on + strand, within SO_3457 at 3603.383 kb on - strand, within SO_3457 at 3603.412 kb on + strand, within SO_3457 at 3603.420 kb on - strand, within SO_3457 at 3603.593 kb on + strand, within SO_3457 at 3603.609 kb on - strand, within SO_3457 at 3603.747 kb on - strand, within SO_3457 at 3603.786 kb on + strand, within SO_3457 at 3603.855 kb on + strand, within SO_3457 at 3603.860 kb on + strand, within SO_3457 at 3603.863 kb on - strand, within SO_3457 at 3603.923 kb on - strand, within SO_3457 at 3603.923 kb on - strand, within SO_3457 at 3603.949 kb on + strand, within SO_3457 at 3603.950 kb on - strand, within SO_3457 at 3603.956 kb on + strand, within SO_3457 at 3603.957 kb on - strand, within SO_3457 at 3604.099 kb on - strand, within SO_3457 at 3604.115 kb on + strand, within SO_3457 at 3604.164 kb on - strand, within SO_3457 at 3604.208 kb on - strand, within SO_3457 at 3604.417 kb on + strand, within SO_3457 at 3604.431 kb on - strand, within SO_3457 at 3604.515 kb on + strand at 3604.515 kb on + strand at 3604.523 kb on - strand at 3604.523 kb on - strand at 3604.561 kb on + strand at 3604.565 kb on + strand at 3604.865 kb on + strand, within SO3458 at 3604.867 kb on + strand, within SO3458 at 3604.867 kb on + strand, within SO3458 at 3604.873 kb on - strand, within SO3458 at 3604.873 kb on - strand, within SO3458 at 3604.877 kb on + strand, within SO3458 at 3604.895 kb on - strand, within SO3458 at 3604.926 kb on + strand, within SO3458 at 3604.934 kb on - strand, within SO3458 at 3604.962 kb on + strand, within SO3458 at 3604.962 kb on + strand, within SO3458 at 3604.962 kb on + strand, within SO3458 at 3604.970 kb on - strand, within SO3458 at 3604.970 kb on - strand, within SO3458 at 3605.159 kb on - strand, within SO3458 at 3605.172 kb on + strand, within SO3458 at 3605.371 kb on - strand at 3605.652 kb on - strand, within SO3459 at 3605.741 kb on + strand at 3605.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 3,600,944 + SO3456 0.34 -2.7 3,600,947 - SO3456 0.34 -3.0 3,600,949 + SO3456 0.34 -0.6 3,600,949 + SO3456 0.34 -2.7 3,600,949 + SO3456 0.34 -1.6 3,600,957 - SO3456 0.35 -0.8 3,600,957 - SO3456 0.35 -1.6 3,600,991 + SO3456 0.37 -0.5 3,600,996 + SO3456 0.37 -2.7 3,601,004 - SO3456 0.38 -1.0 3,601,070 + SO3456 0.43 -1.5 3,601,078 - SO3456 0.44 -1.9 3,601,174 - SO3456 0.51 -1.7 3,601,307 + SO3456 0.61 +0.7 3,601,355 - SO3456 0.64 +0.7 3,601,382 - SO3456 0.66 -1.6 3,601,461 - SO3456 0.72 -3.0 3,601,483 - SO3456 0.74 -3.0 3,601,740 - -2.9 3,601,790 + -2.0 3,601,798 - -1.0 3,601,920 - -1.1 3,601,939 + -1.4 3,601,939 + -3.0 3,601,951 + -0.2 3,602,091 + -0.7 3,602,137 - -1.8 3,602,137 - -0.3 3,602,147 - -0.1 3,602,213 - -2.1 3,602,214 - +0.0 3,602,342 + SO_3457 0.14 -1.5 3,602,342 + SO_3457 0.14 -1.8 3,602,342 + SO_3457 0.14 -0.8 3,602,342 + SO_3457 0.14 -1.8 3,602,342 + SO_3457 0.14 +0.7 3,602,350 - SO_3457 0.15 -1.3 3,602,350 - SO_3457 0.15 -1.1 3,602,350 - SO_3457 0.15 -1.4 3,602,350 - SO_3457 0.15 -1.9 3,602,388 + SO_3457 0.16 -0.1 3,602,492 - SO_3457 0.20 -1.9 3,602,539 - SO_3457 0.21 -1.6 3,602,550 - SO_3457 0.22 +0.0 3,602,593 - SO_3457 0.23 -0.3 3,602,758 - SO_3457 0.29 -0.3 3,602,768 + SO_3457 0.29 -0.7 3,602,776 - SO_3457 0.30 -1.9 3,602,776 - SO_3457 0.30 +0.7 3,602,867 + SO_3457 0.33 -2.1 3,602,875 - SO_3457 0.33 -1.5 3,602,886 + SO_3457 0.34 -1.7 3,602,892 - SO_3457 0.34 -0.7 3,602,894 - SO_3457 0.34 -0.1 3,602,894 - SO_3457 0.34 -1.3 3,602,941 + SO_3457 0.36 -0.8 3,602,955 + SO_3457 0.36 -0.7 3,602,978 + SO_3457 0.37 -0.3 3,603,032 - SO_3457 0.39 +0.2 3,603,117 + SO_3457 0.42 +1.7 3,603,117 + SO_3457 0.42 -0.4 3,603,117 + SO_3457 0.42 -3.0 3,603,117 + SO_3457 0.42 -0.6 3,603,117 + SO_3457 0.42 -1.6 3,603,117 + SO_3457 0.42 +0.2 3,603,117 + SO_3457 0.42 -1.9 3,603,117 + SO_3457 0.42 -0.3 3,603,117 + SO_3457 0.42 -3.1 3,603,117 + SO_3457 0.42 -2.0 3,603,117 + SO_3457 0.42 -1.1 3,603,125 - SO_3457 0.42 +0.2 3,603,125 - SO_3457 0.42 -1.6 3,603,310 + SO_3457 0.49 -0.3 3,603,383 - SO_3457 0.51 -1.7 3,603,412 + SO_3457 0.52 -2.2 3,603,420 - SO_3457 0.53 -2.3 3,603,593 + SO_3457 0.59 +0.2 3,603,609 - SO_3457 0.59 +0.7 3,603,747 - SO_3457 0.64 +0.4 3,603,786 + SO_3457 0.66 -0.3 3,603,855 + SO_3457 0.68 -1.9 3,603,860 + SO_3457 0.68 +0.7 3,603,863 - SO_3457 0.68 -1.6 3,603,923 - SO_3457 0.71 -1.6 3,603,923 - SO_3457 0.71 -3.2 3,603,949 + SO_3457 0.71 -2.1 3,603,950 - SO_3457 0.72 -1.1 3,603,956 + SO_3457 0.72 -2.3 3,603,957 - SO_3457 0.72 -0.3 3,604,099 - SO_3457 0.77 -0.3 3,604,115 + SO_3457 0.77 +1.7 3,604,164 - SO_3457 0.79 -2.1 3,604,208 - SO_3457 0.81 -0.2 3,604,417 + SO_3457 0.88 -1.2 3,604,431 - SO_3457 0.89 -0.6 3,604,515 + -2.6 3,604,515 + +1.2 3,604,523 - +1.2 3,604,523 - +0.4 3,604,561 + -1.6 3,604,565 + +0.2 3,604,865 + SO3458 0.23 +0.4 3,604,867 + SO3458 0.24 +0.3 3,604,867 + SO3458 0.24 -0.2 3,604,873 - SO3458 0.25 +0.2 3,604,873 - SO3458 0.25 +0.5 3,604,877 + SO3458 0.26 -0.2 3,604,895 - SO3458 0.28 +0.8 3,604,926 + SO3458 0.34 -1.2 3,604,934 - SO3458 0.35 +0.5 3,604,962 + SO3458 0.40 +1.5 3,604,962 + SO3458 0.40 -0.5 3,604,962 + SO3458 0.40 -2.2 3,604,970 - SO3458 0.41 +0.2 3,604,970 - SO3458 0.41 -0.2 3,605,159 - SO3458 0.72 -1.9 3,605,172 + SO3458 0.75 +1.2 3,605,371 - +1.9 3,605,652 - SO3459 0.72 +0.0 3,605,741 + -0.6 3,605,748 - +0.8
Or see this region's nucleotide sequence