Strain Fitness in Shewanella oneidensis MR-1 around SO3381

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,518,508	+	cfa	SO3379	0.88	-1.1
3,518,516	-	cfa	SO3379	0.88	+0.2
3,518,516	-	cfa	SO3379	0.88	+2.2
3,518,632	+				+0.7
3,518,725	-				-1.3
3,518,725	-				+0.2
3,518,725	-				-1.9
3,518,725	-				-1.4
3,518,725	-				-0.3
3,518,725	-				-0.5
3,518,783	-		SO3380	0.15	-0.4
3,518,891	+		SO3380	0.29	+2.8
3,518,960	+		SO3380	0.37	+0.0
3,519,003	-		SO3380	0.43	+0.2
3,519,194	+		SO3380	0.67	-0.3
3,519,195	+		SO3380	0.67	+0.7
3,519,297	+		SO3380	0.80	+0.8
3,519,342	-		SO3380	0.86	+1.1
3,519,459	-				-1.3
3,519,459	-				-1.6
3,519,481	+				-0.8
3,519,610	-		SO3381	0.13	-1.3
3,519,792	+		SO3381	0.27	+0.6
3,519,792	+		SO3381	0.27	-1.3
3,519,899	+		SO3381	0.36	+2.2
3,519,918	-		SO3381	0.37	-1.9
3,520,120	-		SO3381	0.53	-1.1
3,520,174	+		SO3381	0.58	+1.8
3,520,223	-		SO3381	0.62	-0.4
3,520,223	-		SO3381	0.62	+0.7
3,520,223	-		SO3381	0.62	+0.0
3,520,441	+		SO3381	0.79	+0.1
3,520,441	+		SO3381	0.79	+1.6
3,520,449	-		SO3381	0.80	+1.0
3,520,512	+		SO3381	0.85	-0.2
3,520,554	+		SO3381	0.88	-0.8
3,520,612	+				-2.7
3,520,648	+				-0.5
3,520,649	-				-0.3
3,520,722	-				+0.2
3,520,722	-				-0.1
3,520,921	-		SO3382	0.28	-0.5
3,521,024	+		SO3382	0.41	+0.0
3,521,024	+		SO3382	0.41	-0.3
3,521,032	-		SO3382	0.42	-0.7
3,521,032	-		SO3382	0.42	-0.8
3,521,069	-		SO3382	0.46	+0.1
3,521,069	-		SO3382	0.46	+0.6
3,521,203	-		SO3382	0.63	-1.3
3,521,215	-		SO3382	0.64	+0.7
3,521,347	-		SO3382	0.81	-0.6
3,521,386	+		SO3382	0.86	+1.0
3,521,394	-		SO3382	0.87	+0.0
3,521,409	-		SO3382	0.89	+1.9
3,521,456	+				+0.3
3,521,615	+		SO3383	0.26	-0.6
3,521,617	-		SO3383	0.26	-2.7
3,521,624	+		SO3383	0.28	+0.9
3,521,636	-		SO3383	0.31	-1.3
3,521,701	+		SO3383	0.45	-0.8