Strain Fitness in Shewanella oneidensis MR-1 around SO3364

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,506,642	-		SO3363	0.62	-2.6
3,506,666	+		SO3363	0.65	-2.6
3,506,668	-		SO3363	0.65	-0.7
3,506,675	+		SO3363	0.65	-1.2
3,506,824	+		SO3363	0.81	+1.0
3,506,824	+		SO3363	0.81	+0.5
3,506,832	-		SO3363	0.82	-1.7
3,506,832	-		SO3363	0.82	+0.5
3,506,832	-		SO3363	0.82	-0.3
3,506,832	-		SO3363	0.82	-2.5
3,506,895	-		SO3363	0.89	+1.3
3,506,949	+				+0.0
3,506,962	-				+0.0
3,507,231	-				-0.2
3,507,246	-				+0.9
3,507,272	+				-2.1
3,507,324	-				+0.5
3,507,404	+				-0.2
3,507,456	-				-1.0
3,507,464	-				+0.4
3,507,484	+				-0.1
3,507,517	-				-0.9
3,507,736	+		SO3364	0.32	-1.5
3,507,859	-		SO3364	0.47	+0.0
3,507,997	+		SO3364	0.64	+0.4
3,507,997	+		SO3364	0.64	+0.8
3,508,018	-		SO3364	0.66	+1.8
3,508,209	+		SO3364	0.90	-1.1
3,508,217	-				+3.0
3,508,269	+				-0.6
3,508,445	+				-1.4
3,508,514	-				+0.9
3,508,656	-	glsA	SO3365	0.20	-1.0
3,508,742	-	glsA	SO3365	0.30	+0.9
3,508,795	-	glsA	SO3365	0.35	+2.0
3,508,830	+	glsA	SO3365	0.39	+0.4
3,508,833	-	glsA	SO3365	0.40	-2.0
3,508,837	+	glsA	SO3365	0.40	+0.3
3,508,879	+	glsA	SO3365	0.45	+0.1
3,508,908	+	glsA	SO3365	0.48	+1.5
3,508,987	+	glsA	SO3365	0.56	-1.5
3,508,989	+	glsA	SO3365	0.57	-2.4
3,509,219	+	glsA	SO3365	0.82	-0.2
3,509,221	-	glsA	SO3365	0.82	+2.0