Strain Fitness in Shewanella oneidensis MR-1 around SO3315

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,465,961	-				-0.9
3,465,961	-				-0.8
3,466,088	-				+0.3
3,466,098	-				-0.2
3,466,108	-				-1.1
3,466,174	-		SO3314	0.13	+0.1
3,466,291	-		SO3314	0.28	-1.1
3,466,315	+		SO3314	0.31	+1.0
3,466,335	-		SO3314	0.34	+1.2
3,466,461	-		SO3314	0.50	+0.5
3,466,619	+		SO3314	0.70	+1.4
3,466,679	-		SO3314	0.77	+0.4
3,466,741	-		SO3314	0.85	-1.6
3,466,798	-				-1.5
3,466,808	+				+0.7
3,466,816	-				+0.4
3,466,816	-				-0.8
3,466,816	-				+1.7
3,466,874	-				-0.9
3,466,874	-				-0.9
3,467,091	+		SO3315	0.18	-1.8
3,467,123	+		SO3315	0.21	-0.5
3,467,171	-		SO3315	0.25	-0.7
3,467,234	-		SO3315	0.31	-0.1
3,467,332	-		SO3315	0.39	-1.5
3,467,379	-		SO3315	0.44	-2.5
3,467,417	-		SO3315	0.47	-1.8
3,467,438	+		SO3315	0.49	+0.2
3,467,493	+		SO3315	0.54	-0.7
3,467,493	+		SO3315	0.54	-0.7
3,467,620	-		SO3315	0.65	+0.7
3,467,888	-		SO3315	0.89	-0.1
3,468,013	+				-1.6
3,468,093	-				+1.6
3,468,187	-				+0.6
3,468,230	+				-1.3
3,468,238	-				-1.3
3,468,277	-		SO3316	0.11	-2.0
3,468,344	+		SO3316	0.17	+1.1
3,468,370	+		SO3316	0.20	+1.0
3,468,446	-		SO3316	0.27	-0.5
3,468,453	+		SO3316	0.27	+0.4
3,468,516	-		SO3316	0.33	+1.4
3,468,550	+		SO3316	0.36	+1.3
3,468,558	-		SO3316	0.37	+0.8
3,468,623	-		SO3316	0.43	-1.2
3,468,709	+		SO3316	0.51	+0.2
3,468,764	+		SO3316	0.56	-1.7
3,468,795	-		SO3316	0.59	-1.4
3,468,935	+		SO3316	0.71	+0.0
3,468,943	-		SO3316	0.72	-0.6