Strain Fitness in Shewanella oneidensis MR-1 around SO3282

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,421,583	+		SO3279	0.85	+0.5
3,421,621	-		SO3279	0.87	-0.0
3,421,621	-		SO3279	0.87	+2.2
3,421,621	-		SO3279	0.87	-0.6
3,421,625	+		SO3279	0.87	-0.7
3,421,630	+		SO3279	0.87	-0.6
3,421,739	+				+1.7
3,421,834	-				+1.7
3,421,853	+				-0.1
3,421,946	-				-1.4
3,422,056	+		SO3280	0.15	-0.9
3,422,131	-		SO3280	0.46	+0.5
3,422,216	-		SO3280	0.80	+1.6
3,422,345	+				-0.7
3,422,374	-				+2.0
3,422,395	-				-0.8
3,422,513	+				+1.1
3,422,522	-				-1.4
3,422,603	-				-0.4
3,422,681	+				+0.0
3,422,751	+		SO3282	0.11	-1.1
3,422,761	+		SO3282	0.11	+0.7
3,422,837	-		SO3282	0.15	-1.2
3,422,880	-		SO3282	0.17	+1.1
3,422,880	-		SO3282	0.17	-0.4
3,422,904	-		SO3282	0.18	+0.3
3,423,024	+		SO3282	0.24	+0.4
3,423,079	+		SO3282	0.27	+0.3
3,423,079	+		SO3282	0.27	-0.2
3,423,087	-		SO3282	0.27	-1.2
3,423,087	-		SO3282	0.27	+0.7
3,423,090	-		SO3282	0.28	+0.5
3,423,103	+		SO3282	0.28	+0.7
3,423,104	+		SO3282	0.28	-1.7
3,423,119	+		SO3282	0.29	+0.5
3,423,247	-		SO3282	0.35	+1.0
3,423,248	-		SO3282	0.35	-1.9
3,423,262	+		SO3282	0.36	-1.7
3,423,302	-		SO3282	0.38	-2.2
3,423,309	+		SO3282	0.39	+1.0
3,423,317	-		SO3282	0.39	-0.5
3,423,317	-		SO3282	0.39	-1.2
3,423,342	-		SO3282	0.40	+1.9
3,423,466	+		SO3282	0.46	-1.2
3,423,508	+		SO3282	0.48	-0.9
3,423,526	-		SO3282	0.49	+0.4
3,423,529	-		SO3282	0.50	+1.1
3,423,554	-		SO3282	0.51	+1.0
3,423,562	-		SO3282	0.51	+1.2
3,423,564	+		SO3282	0.51	+0.7
3,423,564	+		SO3282	0.51	+0.8
3,423,566	+		SO3282	0.51	+1.4
3,423,572	-		SO3282	0.52	-0.6
3,423,574	-		SO3282	0.52	-0.9
3,423,574	-		SO3282	0.52	-0.8
3,423,574	-		SO3282	0.52	+1.7
3,423,712	+		SO3282	0.59	+0.2
3,423,717	+		SO3282	0.59	+0.5
3,423,717	+		SO3282	0.59	+0.0
3,423,717	+		SO3282	0.59	+0.3
3,423,720	-		SO3282	0.59	-2.0
3,423,722	+		SO3282	0.59	+0.6
3,423,725	-		SO3282	0.59	+1.8
3,423,729	+		SO3282	0.59	+1.6
3,423,729	+		SO3282	0.59	+1.4
3,423,729	+		SO3282	0.59	+1.5
3,423,729	+		SO3282	0.59	+1.6
3,423,730	-		SO3282	0.60	+0.8
3,423,737	-		SO3282	0.60	+0.1
3,423,875	-		SO3282	0.67	+1.1
3,423,944	+		SO3282	0.70	+2.3
3,423,944	+		SO3282	0.70	+1.4
3,423,944	+		SO3282	0.70	+1.3
3,423,952	-		SO3282	0.71	+0.6
3,423,952	-		SO3282	0.71	-0.2
3,423,952	-		SO3282	0.71	-0.4
3,423,952	-		SO3282	0.71	+0.4
3,423,952	-		SO3282	0.71	-0.9
3,423,981	+		SO3282	0.72	-0.9
3,424,053	+		SO3282	0.76	-0.6
3,424,150	+		SO3282	0.80	+2.2
3,424,171	+		SO3282	0.82	-2.3
3,424,234	-		SO3282	0.85	-0.8
3,424,445	+				-0.7
3,424,603	+				-0.7
3,424,636	+				+0.6
3,424,978	+				+0.7
3,424,982	+				+2.0
3,424,986	-				-1.4
3,425,000	-				-1.8
3,425,067	+				+0.4
3,425,067	+				+1.4
3,425,072	+				-0.3
3,425,075	-				-0.6
3,425,075	-				+0.7
3,425,167	-	cydB	SO3285	0.16	+0.7
3,425,211	+	cydB	SO3285	0.20	-0.3
3,425,299	+	cydB	SO3285	0.27	+0.2
3,425,398	+	cydB	SO3285	0.36	+0.7
3,425,398	+	cydB	SO3285	0.36	-2.2
3,425,401	-	cydB	SO3285	0.36	+2.0
3,425,406	-	cydB	SO3285	0.37	-1.0
3,425,406	-	cydB	SO3285	0.37	-1.7
3,425,406	-	cydB	SO3285	0.37	+1.4
3,425,406	-	cydB	SO3285	0.37	-0.3