Strain Fitness in Shewanella oneidensis MR-1 around SO3279

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,417,967	-		SO3278	0.12	-0.8
3,417,967	-		SO3278	0.12	-0.3
3,417,995	+		SO3278	0.15	+0.0
3,418,038	+		SO3278	0.19	-0.3
3,418,046	-		SO3278	0.19	+2.6
3,418,046	-		SO3278	0.19	+0.4
3,418,046	-		SO3278	0.19	+1.4
3,418,140	-		SO3278	0.28	+1.3
3,418,182	-		SO3278	0.32	+1.7
3,418,208	+		SO3278	0.34	-2.0
3,418,261	-		SO3278	0.39	+0.3
3,418,287	+		SO3278	0.41	+0.8
3,418,441	-		SO3278	0.55	-1.3
3,418,507	-		SO3278	0.60	-1.0
3,418,509	-		SO3278	0.61	-1.1
3,418,601	+		SO3278	0.69	+0.6
3,418,784	+		SO3278	0.85	-0.1
3,418,795	+		SO3278	0.86	+0.5
3,418,825	+		SO3278	0.89	+0.1
3,418,833	-		SO3278	0.89	-1.0
3,418,833	-		SO3278	0.89	+1.0
3,418,840	+				+0.2
3,418,840	+				-0.4
3,418,840	+				+1.6
3,418,848	-				-0.5
3,418,848	-				-0.7
3,418,905	+				-0.2
3,418,991	+				+0.7
3,418,999	-				-0.3
3,419,037	-				-0.6
3,419,264	+		SO3279	0.10	+0.8
3,419,264	+		SO3279	0.10	+1.1
3,419,272	-		SO3279	0.10	+1.7
3,419,397	+		SO3279	0.14	-0.1
3,419,699	+		SO3279	0.24	-0.8
3,419,702	-		SO3279	0.24	+1.1
3,419,944	-		SO3279	0.32	-1.1
3,419,989	+		SO3279	0.34	-1.7
3,420,019	-		SO3279	0.35	+1.3
3,420,019	-		SO3279	0.35	+0.6
3,420,019	-		SO3279	0.35	+1.6
3,420,066	+		SO3279	0.36	+0.5
3,420,070	+		SO3279	0.36	-1.2
3,420,072	-		SO3279	0.36	+0.7
3,420,078	-		SO3279	0.36	+0.4
3,420,138	-		SO3279	0.38	+0.1
3,420,145	-		SO3279	0.39	-0.1
3,420,187	-		SO3279	0.40	-0.9
3,420,261	-		SO3279	0.42	+0.1
3,420,364	-		SO3279	0.46	+1.4
3,420,366	+		SO3279	0.46	+0.4
3,420,374	-		SO3279	0.46	+1.6
3,420,716	+		SO3279	0.57	-1.2
3,420,770	+		SO3279	0.59	-1.7
3,420,803	+		SO3279	0.60	+0.8
3,420,808	-		SO3279	0.60	+0.7
3,420,885	-		SO3279	0.63	+0.0
3,421,044	-		SO3279	0.68	+0.1
3,421,115	+		SO3279	0.70	-0.6
3,421,115	+		SO3279	0.70	+1.5
3,421,122	-		SO3279	0.70	+0.1
3,421,123	-		SO3279	0.70	-0.3
3,421,331	+		SO3279	0.77	+0.7
3,421,389	-		SO3279	0.79	-1.1
3,421,405	-		SO3279	0.80	-1.0
3,421,583	+		SO3279	0.85	+0.5
3,421,621	-		SO3279	0.87	-0.0
3,421,621	-		SO3279	0.87	+2.2
3,421,621	-		SO3279	0.87	-0.6
3,421,625	+		SO3279	0.87	-0.7
3,421,630	+		SO3279	0.87	-0.6
3,421,739	+				+1.7
3,421,834	-				+1.7
3,421,853	+				-0.1
3,421,946	-				-1.4
3,422,056	+		SO3280	0.15	-0.9
3,422,131	-		SO3280	0.46	+0.5
3,422,216	-		SO3280	0.80	+1.6
3,422,345	+				-0.7
3,422,374	-				+2.0
3,422,395	-				-0.8
3,422,513	+				+1.1
3,422,522	-				-1.4
3,422,603	-				-0.4
3,422,681	+				+0.0
3,422,751	+		SO3282	0.11	-1.1
3,422,761	+		SO3282	0.11	+0.7
3,422,837	-		SO3282	0.15	-1.2
3,422,880	-		SO3282	0.17	+1.1
3,422,880	-		SO3282	0.17	-0.4
3,422,904	-		SO3282	0.18	+0.3
3,423,024	+		SO3282	0.24	+0.4