Strain Fitness in Shewanella oneidensis MR-1 around SO3189

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,326,056	-	rfbB	SO3188	0.13	+1.2
3,326,395	-	rfbB	SO3188	0.43	+1.8
3,326,464	+	rfbB	SO3188	0.49	+1.4
3,326,478	+	rfbB	SO3188	0.50	+1.3
3,326,515	-	rfbB	SO3188	0.53	+1.8
3,326,681	+	rfbB	SO3188	0.68	+1.8
3,326,681	+	rfbB	SO3188	0.68	+1.6
3,326,681	+	rfbB	SO3188	0.68	+0.3
3,326,689	-	rfbB	SO3188	0.69	+0.9
3,326,689	-	rfbB	SO3188	0.69	+0.1
3,326,689	-	rfbB	SO3188	0.69	+3.1
3,326,689	-	rfbB	SO3188	0.69	+2.8
3,326,689	-	rfbB	SO3188	0.69	+3.7
3,326,689	-	rfbB	SO3188	0.69	+4.2
3,326,696	+	rfbB	SO3188	0.70	-0.7
3,326,696	+	rfbB	SO3188	0.70	+0.1
3,326,704	-	rfbB	SO3188	0.70	+0.6
3,326,711	+	rfbB	SO3188	0.71	-0.5
3,326,711	+	rfbB	SO3188	0.71	+3.1
3,326,719	-	rfbB	SO3188	0.72	+0.8
3,326,719	-	rfbB	SO3188	0.72	+1.5
3,326,719	-	rfbB	SO3188	0.72	+1.6
3,326,719	-	rfbB	SO3188	0.72	+2.5
3,326,719	-	rfbB	SO3188	0.72	+1.1
3,326,719	-	rfbB	SO3188	0.72	+0.6
3,326,719	-	rfbB	SO3188	0.72	+0.6
3,326,719	-	rfbB	SO3188	0.72	+2.1
3,326,719	-	rfbB	SO3188	0.72	+2.4
3,326,719	-	rfbB	SO3188	0.72	-1.4
3,326,719	-	rfbB	SO3188	0.72	+3.1
3,326,783	+	rfbB	SO3188	0.77	+1.0
3,326,783	+	rfbB	SO3188	0.77	+2.1
3,326,791	-	rfbB	SO3188	0.78	+0.3
3,326,791	-	rfbB	SO3188	0.78	+3.8
3,326,791	-	rfbB	SO3188	0.78	+2.8
3,326,791	-	rfbB	SO3188	0.78	+2.9
3,326,791	-	rfbB	SO3188	0.78	+2.3
3,326,791	-	rfbB	SO3188	0.78	+0.3
3,326,791	-	rfbB	SO3188	0.78	+0.2
3,326,791	-	rfbB	SO3188	0.78	+1.9
3,326,803	+	rfbB	SO3188	0.79	+1.1
3,326,803	+	rfbB	SO3188	0.79	+3.1
3,326,803	+	rfbB	SO3188	0.79	+2.6
3,326,803	+	rfbB	SO3188	0.79	+1.8
3,326,803	-	rfbB	SO3188	0.79	+0.4
3,326,806	+	rfbB	SO3188	0.79	+0.6
3,326,811	-	rfbB	SO3188	0.80	+1.1
3,326,811	-	rfbB	SO3188	0.80	+3.2
3,326,811	-	rfbB	SO3188	0.80	+0.8
3,326,962	+				+3.1
3,326,962	+				+0.1
3,326,962	+				+1.0
3,326,962	+				+2.1
3,326,962	+				+1.1
3,326,962	+				+0.6
3,326,962	+				+0.8
3,326,962	+				+0.6
3,326,970	-				-1.5
3,326,970	-				-0.2
3,326,970	-				+2.1
3,326,970	-				+0.7
3,326,994	-				+1.9
3,327,135	+				+2.1
3,327,135	+				+3.1
3,327,143	-				-0.6
3,327,143	-				-1.9
3,327,143	-				-0.8
3,327,153	-		SO3189	0.11	-1.9
3,327,211	-		SO3189	0.17	-1.3
3,327,211	-		SO3189	0.17	-0.0
3,327,239	-		SO3189	0.19	+0.1
3,327,265	-		SO3189	0.22	-1.7
3,327,275	-		SO3189	0.23	-1.4
3,327,482	+		SO3189	0.43	+3.1
3,327,490	-		SO3189	0.44	+0.1
3,327,500	-		SO3189	0.45	+0.1
3,327,535	-		SO3189	0.48	-1.6
3,327,535	-		SO3189	0.48	-0.7
3,327,538	+		SO3189	0.48	-0.2
3,327,546	-		SO3189	0.49	-0.4
3,327,546	-		SO3189	0.49	-2.4
3,327,604	+		SO3189	0.55	+3.1
3,327,604	+		SO3189	0.55	-0.9
3,327,607	-		SO3189	0.55	-1.9
3,327,612	-		SO3189	0.56	-1.6
3,327,612	-				+0.3
3,327,612	-		SO3189	0.56	-1.2
3,327,624	-		SO3189	0.57	-2.0
3,327,660	+		SO3189	0.60	+0.6
3,327,693	-		SO3189	0.64	+0.1
3,327,750	+		SO3189	0.69	+0.8
3,327,755	+		SO3189	0.70	+1.1
3,327,762	+		SO3189	0.70	+0.1
3,327,762	+		SO3189	0.70	+0.6
3,327,762	+		SO3189	0.70	+0.8
3,327,762	+		SO3189	0.70	+1.6
3,327,762	+		SO3189	0.70	+2.1
3,327,762	+		SO3189	0.70	+0.6
3,327,762	+		SO3189	0.70	-1.4
3,327,763	-		SO3189	0.70	-2.2
3,327,770	-		SO3189	0.71	-2.4
3,327,770	-		SO3189	0.71	-3.5
3,327,770	-		SO3189	0.71	-1.2
3,327,770	-		SO3189	0.71	-1.8
3,327,770	-		SO3189	0.71	-1.9
3,327,770	-		SO3189	0.71	+0.3
3,327,770	-		SO3189	0.71	-2.4
3,327,780	-		SO3189	0.72	-1.5
3,327,788	+		SO3189	0.73	-0.2
3,327,828	-		SO3189	0.77	-3.1
3,327,866	+		SO3189	0.81	+0.3
3,328,085	+				+0.8
3,328,085	+				+1.6
3,328,093	-				+1.5
3,328,093	-				+0.7
3,328,098	+				+1.6
3,328,098	+				-0.3
3,328,159	-				+1.4
3,328,162	+				+0.3
3,328,199	+				-2.0
3,328,230	+				+2.1
3,328,238	-				+2.8
3,328,298	-		SO3190	0.11	+2.9
3,328,342	-		SO3190	0.15	+1.6
3,328,352	-		SO3190	0.16	+0.1
3,328,373	-		SO3190	0.17	+2.9
3,328,413	+		SO3190	0.20	+1.1
3,328,422	+		SO3190	0.21	+1.9
3,328,433	+		SO3190	0.22	+3.6
3,328,433	+		SO3190	0.22	+2.6
3,328,441	-		SO3190	0.23	+1.9
3,328,441	-		SO3190	0.23	+1.5
3,328,441	-		SO3190	0.23	+2.4
3,328,446	-		SO3190	0.23	+0.8
3,328,488	+		SO3190	0.26	+3.1
3,328,546	+		SO3190	0.31	+0.8
3,328,554	-		SO3190	0.31	+1.0
3,328,633	+		SO3190	0.38	+2.1
3,328,641	-		SO3190	0.38	+3.1
3,328,658	+		SO3190	0.40	+1.8
3,328,704	+		SO3190	0.43	+1.1
3,328,722	-		SO3190	0.45	+1.1
3,328,722	-		SO3190	0.45	+1.2
3,328,733	-		SO3190	0.45	+2.1
3,328,768	+		SO3190	0.48	+2.6
3,328,830	-		SO3190	0.53	+2.1
3,328,837	+		SO3190	0.54	+2.1
3,328,845	-		SO3190	0.54	+1.2
3,328,966	+		SO3190	0.64	+3.9
3,328,999	-		SO3190	0.66	-0.7
3,329,018	-		SO3190	0.68	+4.0
3,329,036	+		SO3190	0.69	+1.6