Strain Fitness in Shewanella oneidensis MR-1 around SO3142

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,275,289	-		SO3140.2	0.77	-0.6
3,275,313	+		SO3140.2	0.79	+0.8
3,275,371	+		SO3140.2	0.86	+0.9
3,275,379	-		SO3140.2	0.86	+0.2
3,275,379	-		SO3140.2	0.86	+1.8
3,275,379	-		SO3140.2	0.86	+0.3
3,275,379	-		SO3140.2	0.86	-0.2
3,275,489	-				+0.9
3,275,549	+		SO3140.3	0.13	-0.7
3,275,557	-		SO3140.3	0.15	+1.0
3,275,623	+		SO3140.3	0.33	+0.9
3,275,669	-		SO3140.3	0.46	-0.3
3,275,704	-		SO3140.3	0.55	-0.1
3,275,704	-		SO3140.3	0.55	-0.5
3,275,792	+		SO3140.3	0.79	-0.0
3,275,925	-		SO_3141	0.29	+0.7
3,275,944	+		SO_3141	0.39	+2.1
3,275,975	+		SO_3141	0.54	+0.2
3,276,007	+		SO_3141	0.70	+0.3
3,276,082	+				+0.7
3,276,090	-				-0.7
3,276,229	+				-0.2
3,276,237	-				+0.7
3,276,319	+				+0.5
3,276,335	-				+0.1
3,276,363	-				+0.2
3,276,493	+				+2.0
3,276,501	-				-0.3
3,276,558	-	dcp-1	SO3142	0.13	-0.7
3,276,596	-	dcp-1	SO3142	0.14	+1.5
3,276,596	-	dcp-1	SO3142	0.14	+1.7
3,276,630	-	dcp-1	SO3142	0.16	+0.9
3,276,643	+	dcp-1	SO3142	0.17	-0.2
3,276,643	+	dcp-1	SO3142	0.17	+0.5
3,276,643	+	dcp-1	SO3142	0.17	-1.4
3,276,643	+	dcp-1	SO3142	0.17	+0.1
3,276,643	+	dcp-1	SO3142	0.17	+0.8
3,276,651	-	dcp-1	SO3142	0.17	+1.8
3,276,651	-	dcp-1	SO3142	0.17	+0.7
3,276,651	-	dcp-1	SO3142	0.17	+0.8
3,276,711	-	dcp-1	SO3142	0.20	-0.9
3,276,770	-	dcp-1	SO3142	0.22	+1.1
3,276,775	+	dcp-1	SO3142	0.23	-0.7
3,276,775	+	dcp-1	SO3142	0.23	-0.3
3,276,784	-	dcp-1	SO3142	0.23	+1.1
3,276,837	-	dcp-1	SO3142	0.26	-0.2
3,276,883	+	dcp-1	SO3142	0.28	-0.4
3,276,927	+	dcp-1	SO3142	0.30	+0.1
3,276,968	-	dcp-1	SO3142	0.32	+2.0
3,277,032	+	dcp-1	SO3142	0.35	-0.9
3,277,068	-	dcp-1	SO3142	0.36	-0.5
3,277,084	+	dcp-1	SO3142	0.37	+1.3
3,277,145	-	dcp-1	SO3142	0.40	+0.8
3,277,490	-	dcp-1	SO3142	0.56	+0.1
3,277,504	+	dcp-1	SO3142	0.57	+1.3
3,277,504	+	dcp-1	SO3142	0.57	+1.6
3,277,528	+	dcp-1	SO3142	0.58	+0.6
3,277,528	+	dcp-1	SO3142	0.58	+1.1
3,277,536	-	dcp-1	SO3142	0.58	+0.3
3,277,553	-	dcp-1	SO3142	0.59	-0.4
3,277,624	-	dcp-1	SO3142	0.62	+0.3
3,277,688	-	dcp-1	SO3142	0.65	-1.0
3,277,766	-	dcp-1	SO3142	0.69	+0.3
3,277,904	+	dcp-1	SO3142	0.75	+0.7
3,277,904	+	dcp-1	SO3142	0.75	-1.2
3,277,926	-	dcp-1	SO3142	0.76	-0.2
3,277,957	-	dcp-1	SO3142	0.78	-0.3
3,278,036	+	dcp-1	SO3142	0.81	+0.9
3,278,102	-	dcp-1	SO3142	0.84	+1.4
3,278,140	+	dcp-1	SO3142	0.86	+2.1
3,278,148	-	dcp-1	SO3142	0.86	-0.1
3,278,160	-	dcp-1	SO3142	0.87	-0.1
3,278,192	+	dcp-1	SO3142	0.89	+0.9
3,278,229	+				-0.2
3,278,286	+				+1.4
3,278,286	+				+0.0
3,278,294	-				-1.8
3,278,344	+				+2.1
3,278,388	-				-0.1
3,278,509	+				+1.1
3,278,777	+				+0.3
3,278,852	+				-1.3
3,278,923	+		SO_3143	0.14	+0.4
3,278,931	-		SO_3143	0.15	+1.9
3,278,959	+		SO_3143	0.19	+0.1
3,279,082	-		SO_3143	0.36	+0.7
3,279,148	+		SO_3143	0.45	-0.2
3,279,248	-		SO_3143	0.59	-0.4
3,279,323	+		SO_3143	0.70	-0.3
3,279,340	+		SO_3143	0.72	+1.6
3,279,356	+		SO_3143	0.74	+0.9
3,279,361	-		SO_3143	0.75	+1.6
3,279,366	+		SO_3143	0.76	+0.1
3,279,366	+		SO_3143	0.76	-1.2
3,279,366	+		SO_3143	0.76	+0.4
3,279,369	-		SO_3143	0.76	-0.5
3,279,374	-		SO_3143	0.77	+0.8
3,279,374	-		SO_3143	0.77	+1.7
3,279,374	-		SO_3143	0.77	+1.0
3,279,374	-		SO_3143	0.77	-2.4
3,279,383	-		SO_3143	0.78	-1.2
3,279,393	+		SO_3143	0.79	+1.1
3,279,405	-		SO_3143	0.81	-0.5
3,279,410	-		SO_3143	0.82	+0.1