Strain Fitness in Shewanella oneidensis MR-1 around SO3095

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,219,188	+		SO3094	0.52	-2.2
3,219,211	-		SO3094	0.53	-0.6
3,219,228	-		SO3094	0.54	-2.5
3,219,282	+		SO3094	0.57	-3.0
3,219,282	+		SO3094	0.57	-1.1
3,219,285	-		SO3094	0.57	-0.1
3,219,290	-		SO3094	0.57	-0.7
3,219,411	+		SO3094	0.63	-2.0
3,219,519	-		SO3094	0.68	-2.0
3,219,563	-		SO3094	0.70	-1.9
3,219,586	-		SO3094	0.72	-2.3
3,219,586	-		SO3094	0.72	-1.6
3,219,669	+		SO3094	0.76	+1.3
3,219,704	+		SO3094	0.77	-0.4
3,219,738	-		SO3094	0.79	-1.6
3,219,814	-		SO3094	0.83	-0.5
3,219,833	-		SO3094	0.84	-0.3
3,219,952	+		SO3094	0.90	+0.8
3,220,216	+				+0.9
3,220,216	+				-0.6
3,220,216	+				-2.8
3,220,216	+				-0.4
3,220,216	+				-2.5
3,220,216	+				+3.4
3,220,216	+				-1.5
3,220,216	+				-2.4
3,220,224	-				-2.3
3,220,224	-				-1.1
3,220,224	-				-0.2
3,220,224	-				-1.2
3,220,224	-				-1.0
3,220,262	+				-1.6
3,220,307	+				-1.6
3,220,376	-		SO3095	0.13	-0.9
3,220,386	-		SO3095	0.14	+1.6
3,220,451	-		SO3095	0.18	-2.4
3,220,670	+		SO3095	0.31	-0.7
3,220,704	+		SO3095	0.33	-1.2
3,220,711	-		SO3095	0.33	-1.8
3,220,714	+		SO3095	0.33	-1.8
3,220,714	+		SO3095	0.33	-0.8
3,220,714	+		SO3095	0.33	-0.1
3,220,722	-		SO3095	0.34	+1.9
3,220,722	-		SO3095	0.34	-2.5
3,220,746	-		SO3095	0.35	-0.7
3,220,770	+		SO3095	0.37	-1.1
3,220,923	+		SO3095	0.46	-1.4
3,221,110	-		SO3095	0.57	-1.3
3,221,130	+		SO3095	0.58	-1.3
3,221,178	+		SO3095	0.61	-1.1
3,221,195	-		SO3095	0.62	-2.0
3,221,347	+		SO3095	0.71	-0.5
3,221,347	+		SO3095	0.71	-1.5
3,221,372	-		SO3095	0.73	+0.5
3,221,399	+		SO3095	0.74	-1.6
3,221,407	-		SO3095	0.75	-0.9
3,221,407	-		SO3095	0.75	+0.3
3,221,442	+		SO3095	0.77	-0.4
3,221,532	+		SO3095	0.82	-3.2
3,221,540	-		SO3095	0.83	+0.9
3,221,582	+		SO3095	0.85	-0.9
3,221,595	-		SO3095	0.86	-0.5
3,221,814	-				-0.9
3,221,820	-				+0.3
3,221,829	+				+0.0
3,221,914	+				+0.2
3,221,935	+				+1.0
3,222,116	+		SO3096	0.40	-1.1
3,222,202	+		SO3096	0.55	-1.1
3,222,323	+		SO3096	0.76	+0.1
3,222,323	+		SO3096	0.76	+0.3
3,222,402	-				+1.6
3,222,525	+		SO3097	0.11	-0.5
3,222,525	+		SO3097	0.11	+0.3
3,222,525	+		SO3097	0.11	-1.7
3,222,728	+		SO3097	0.40	+1.9