Strain Fitness in Shewanella oneidensis MR-1 around SO3080

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,198,794	-				+0.0
3,199,005	-		SO3078.2	0.29	-0.9
3,199,188	-		SO3078.2	0.53	-0.3
3,199,230	+		SO3078.2	0.58	+1.9
3,199,273	+		SO3078.2	0.63	+1.3
3,199,422	+		SO3078.2	0.82	-0.5
3,199,454	+		SO3078.2	0.87	+1.3
3,199,501	-				-0.6
3,199,828	+		SO3080	0.15	+0.0
3,199,828	+		SO3080	0.15	-1.2
3,199,833	+		SO3080	0.16	-0.5
3,199,833	+		SO3080	0.16	-2.3
3,199,836	-		SO3080	0.16	-0.1
3,199,836	-		SO3080	0.16	-1.4
3,199,836	-		SO3080	0.16	+0.9
3,199,917	-		SO3080	0.25	-1.6
3,199,917	-		SO3080	0.25	-0.9
3,199,917	-		SO3080	0.25	+1.6
3,199,933	-		SO3080	0.27	-0.9
3,199,948	+		SO3080	0.28	-0.8
3,200,089	+		SO3080	0.44	-1.9
3,200,089	+		SO3080	0.44	-2.1
3,200,089	+		SO3080	0.44	-1.0
3,200,089	+		SO3080	0.44	-2.2
3,200,097	-		SO3080	0.45	-1.0
3,200,097	-		SO3080	0.45	+0.3
3,200,103	+		SO3080	0.45	-1.8
3,200,111	-		SO3080	0.46	-1.6
3,200,111	-		SO3080	0.46	+1.0
3,200,111	-		SO3080	0.46	-2.0
3,200,331	-		SO3080	0.70	+0.0
3,200,466	+		SO3080	0.85	-1.4
3,200,494	-		SO3080	0.88	-1.7
3,200,500	-		SO3080	0.88	-1.9
3,200,565	+				-0.9
3,200,589	-				+1.0
3,200,589	-				+1.4
3,200,589	-				-2.0
3,200,599	-				+0.9
3,200,669	-				-0.3
3,200,671	-				-0.1
3,200,695	-				-0.8
3,200,913	+		SO3081	0.38	+1.5
3,200,954	-		SO3081	0.45	-0.9
3,201,043	+		SO3081	0.62	+0.7
3,201,051	-		SO3081	0.64	+0.3
3,201,085	-		SO3081	0.70	+1.9
3,201,098	-		SO3081	0.73	-0.0
3,201,150	+		SO3081	0.82	+1.3
3,201,150	+		SO3081	0.82	+0.2
3,201,158	-		SO3081	0.84	-1.4
3,201,158	-		SO3081	0.84	+0.5
3,201,400	-	sixA	SO3082	0.17	+4.9
3,201,424	-	sixA	SO3082	0.22	+1.2
3,201,424	-				+2.5
3,201,436	-	sixA	SO3082	0.24	+3.2
3,201,490	+	sixA	SO3082	0.36	+0.7
3,201,498	-	sixA	SO3082	0.38	+4.2
3,201,536	-	sixA	SO3082	0.46	+3.4
3,201,550	+	sixA	SO3082	0.49	+0.9