Strain Fitness in Shewanella oneidensis MR-1 around SO3023

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,133,945	+	trpC/F	SO3022	0.43	-0.3
3,134,058	+	trpC/F	SO3022	0.51	-1.3
3,134,139	+	trpC/F	SO3022	0.57	-0.5
3,134,249	+	trpC/F	SO3022	0.65	-2.0
3,134,249	+	trpC/F	SO3022	0.65	-1.5
3,134,257	-	trpC/F	SO3022	0.65	-1.0
3,134,345	+	trpC/F	SO3022	0.71	-2.8
3,134,365	-	trpC/F	SO3022	0.73	-1.9
3,134,365	-	trpC/F	SO3022	0.73	-2.0
3,134,399	-	trpC/F	SO3022	0.75	-2.3
3,134,402	+	trpC/F	SO3022	0.76	-0.3
3,134,431	-	trpC/F	SO3022	0.78	-1.6
3,134,454	+	trpC/F	SO3022	0.79	-1.4
3,134,454	+	trpC/F	SO3022	0.79	-2.2
3,134,496	-	trpC/F	SO3022	0.82	-2.7
3,134,552	-	trpC/F	SO3022	0.86	+1.1
3,134,703	+				-0.3
3,134,797	+				-1.3
3,134,850	+				-0.9
3,134,880	-				-2.4
3,134,996	-	trpB	SO3023	0.11	-1.0
3,134,996	-	trpB	SO3023	0.11	-0.9
3,135,032	+	trpB	SO3023	0.14	-1.4
3,135,111	-	trpB	SO3023	0.21	-1.2
3,135,139	+	trpB	SO3023	0.23	+2.8
3,135,139	+	trpB	SO3023	0.23	-2.0
3,135,205	+	trpB	SO3023	0.28	-2.1
3,135,205	+	trpB	SO3023	0.28	-1.9
3,135,213	-	trpB	SO3023	0.29	-1.3
3,135,226	+	trpB	SO3023	0.30	-2.5
3,135,226	+	trpB	SO3023	0.30	-0.9
3,135,234	-	trpB	SO3023	0.31	+0.0
3,135,262	+	trpB	SO3023	0.33	-2.1
3,135,262	+	trpB	SO3023	0.33	-1.3
3,135,262	+	trpB	SO3023	0.33	-2.4
3,135,264	+	trpB	SO3023	0.33	-1.9
3,135,270	-	trpB	SO3023	0.34	-2.3
3,135,270	-	trpB	SO3023	0.34	-1.3
3,135,270	-	trpB	SO3023	0.34	-2.6
3,135,270	-	trpB	SO3023	0.34	-0.6
3,135,272	-	trpB	SO3023	0.34	-1.0
3,135,272	-	trpB	SO3023	0.34	-0.7
3,135,398	+	trpB	SO3023	0.45	-3.4
3,135,624	+	trpB	SO3023	0.64	-0.5
3,135,651	-	trpB	SO3023	0.66	-3.6
3,135,659	+	trpB	SO3023	0.67	-3.7
3,135,775	+	trpB	SO3023	0.76	-2.6
3,135,775	+	trpB	SO3023	0.76	-1.7
3,135,783	-	trpB	SO3023	0.77	+1.3
3,135,805	-	trpB	SO3023	0.79	-0.7
3,135,805	-	trpB	SO3023	0.79	+0.0
3,135,933	+	trpB	SO3023	0.90	-0.6
3,135,941	-				-1.0
3,135,943	-				-1.3
3,136,061	+				-0.2
3,136,092	+				-1.1
3,136,150	+	trpA	SO3024	0.11	-1.0
3,136,160	-	trpA	SO3024	0.12	-1.7
3,136,183	+	trpA	SO3024	0.14	-0.1
3,136,191	-	trpA	SO3024	0.15	-1.6
3,136,191	-	trpA	SO3024	0.15	-0.9
3,136,218	+	trpA	SO3024	0.19	-2.5
3,136,242	+	trpA	SO3024	0.22	-2.4
3,136,339	+	trpA	SO3024	0.33	-0.9
3,136,390	+	trpA	SO3024	0.39	-0.5
3,136,390	+	trpA	SO3024	0.39	-2.1
3,136,409	+	trpA	SO3024	0.41	-1.6
3,136,417	-	trpA	SO3024	0.42	-2.1
3,136,417	-	trpA	SO3024	0.42	-2.2
3,136,530	+	trpA	SO3024	0.56	-2.0
3,136,532	-	trpA	SO3024	0.56	-1.3
3,136,532	-	trpA	SO3024	0.56	-3.5
3,136,538	-	trpA	SO3024	0.57	-0.2
3,136,610	+	trpA	SO3024	0.65	-2.7
3,136,618	-	trpA	SO3024	0.66	-1.7
3,136,722	+	trpA	SO3024	0.79	-1.2
3,136,757	-	trpA	SO3024	0.83	-1.8
3,136,757	-	trpA	SO3024	0.83	-1.7
3,136,987	+				-2.3
3,136,987	+				+1.4
3,137,004	+				+0.7
3,137,004	+				+0.3
3,137,012	-				-0.6