Strain Fitness in Shewanella oneidensis MR-1 around SO3022

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,132,412	-	trpD	SO3021	0.20	-2.2
3,132,418	-	trpD	SO3021	0.21	-2.2
3,132,419	-	trpD	SO3021	0.21	-2.6
3,132,504	+	trpD	SO3021	0.29	-0.8
3,132,596	-	trpD	SO3021	0.38	+1.8
3,132,625	+	trpD	SO3021	0.41	-2.1
3,132,625	+	trpD	SO3021	0.41	-1.4
3,132,646	+	trpD	SO3021	0.43	+0.5
3,132,646	+	trpD	SO3021	0.43	-2.4
3,132,646	+	trpD	SO3021	0.43	-0.7
3,132,654	-	trpD	SO3021	0.43	+0.8
3,132,654	-	trpD	SO3021	0.43	-3.7
3,132,681	+	trpD	SO3021	0.46	-1.1
3,132,711	+	trpD	SO3021	0.49	-1.7
3,132,775	-	trpD	SO3021	0.55	+0.8
3,132,801	+	trpD	SO3021	0.57	-0.8
3,132,809	-	trpD	SO3021	0.58	-0.6
3,132,811	+	trpD	SO3021	0.58	-2.2
3,132,843	+	trpD	SO3021	0.61	-2.4
3,132,873	+	trpD	SO3021	0.64	+0.3
3,132,932	+	trpD	SO3021	0.70	-1.4
3,133,085	-	trpD	SO3021	0.85	-1.8
3,133,174	-				-0.4
3,133,229	-				-2.4
3,133,230	-				-3.0
3,133,268	+				-2.6
3,133,337	+				-3.9
3,133,337	+				-2.9
3,133,345	-				-1.7
3,133,406	+				-1.0
3,133,407	+				-1.7
3,133,415	-				-0.5
3,133,540	-	trpC/F	SO3022	0.14	-4.1
3,133,540	-	trpC/F	SO3022	0.14	-1.1
3,133,659	+	trpC/F	SO3022	0.23	+1.3
3,133,766	+	trpC/F	SO3022	0.30	-2.6
3,133,945	+	trpC/F	SO3022	0.43	-0.3
3,134,058	+	trpC/F	SO3022	0.51	-1.3
3,134,139	+	trpC/F	SO3022	0.57	-0.5
3,134,249	+	trpC/F	SO3022	0.65	-2.0
3,134,249	+	trpC/F	SO3022	0.65	-1.5
3,134,257	-	trpC/F	SO3022	0.65	-1.0
3,134,345	+	trpC/F	SO3022	0.71	-2.8
3,134,365	-	trpC/F	SO3022	0.73	-1.9
3,134,365	-	trpC/F	SO3022	0.73	-2.0
3,134,399	-	trpC/F	SO3022	0.75	-2.3
3,134,402	+	trpC/F	SO3022	0.76	-0.3
3,134,431	-	trpC/F	SO3022	0.78	-1.6
3,134,454	+	trpC/F	SO3022	0.79	-1.4
3,134,454	+	trpC/F	SO3022	0.79	-2.2
3,134,496	-	trpC/F	SO3022	0.82	-2.7
3,134,552	-	trpC/F	SO3022	0.86	+1.1
3,134,703	+				-0.3
3,134,797	+				-1.3
3,134,850	+				-0.9
3,134,880	-				-2.4
3,134,996	-	trpB	SO3023	0.11	-1.0
3,134,996	-	trpB	SO3023	0.11	-0.9
3,135,032	+	trpB	SO3023	0.14	-1.4
3,135,111	-	trpB	SO3023	0.21	-1.2
3,135,139	+	trpB	SO3023	0.23	+2.8
3,135,139	+	trpB	SO3023	0.23	-2.0
3,135,205	+	trpB	SO3023	0.28	-2.1
3,135,205	+	trpB	SO3023	0.28	-1.9
3,135,213	-	trpB	SO3023	0.29	-1.3
3,135,226	+	trpB	SO3023	0.30	-2.5
3,135,226	+	trpB	SO3023	0.30	-0.9
3,135,234	-	trpB	SO3023	0.31	+0.0
3,135,262	+	trpB	SO3023	0.33	-2.1
3,135,262	+	trpB	SO3023	0.33	-1.3
3,135,262	+	trpB	SO3023	0.33	-2.4
3,135,264	+	trpB	SO3023	0.33	-1.9
3,135,270	-	trpB	SO3023	0.34	-2.3
3,135,270	-	trpB	SO3023	0.34	-1.3
3,135,270	-	trpB	SO3023	0.34	-2.6
3,135,270	-	trpB	SO3023	0.34	-0.6
3,135,272	-	trpB	SO3023	0.34	-1.0
3,135,272	-	trpB	SO3023	0.34	-0.7
3,135,398	+	trpB	SO3023	0.45	-3.4
3,135,624	+	trpB	SO3023	0.64	-0.5
3,135,651	-	trpB	SO3023	0.66	-3.6
3,135,659	+	trpB	SO3023	0.67	-3.7