Strain Fitness in Shewanella oneidensis MR-1 around SO3021

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,131,217	+	trpE	SO3019	0.79	-1.6
3,131,225	-	trpE	SO3019	0.79	-2.5
3,131,225	-	trpE	SO3019	0.79	+1.3
3,131,225	-	trpE	SO3019	0.79	-0.4
3,131,343	-	trpE	SO3019	0.86	-4.2
3,131,403	-	trpE	SO3019	0.90	-0.6
3,131,403	-	trpE	SO3019	0.90	-3.3
3,131,408	-	trpE	SO3019	0.90	-1.8
3,131,408	-	trpE	SO3019	0.90	-1.3
3,131,414	-				-2.4
3,131,416	+				-2.1
3,131,435	-				-1.9
3,131,511	+				-0.7
3,131,519	-				-2.9
3,131,555	+				-2.0
3,131,576	+				-1.9
3,131,584	-				-1.6
3,131,743	+	trpG	SO3020	0.25	-1.8
3,131,743	+	trpG	SO3020	0.25	-0.6
3,131,751	-	trpG	SO3020	0.26	-1.2
3,131,770	-	trpG	SO3020	0.29	-3.3
3,132,075	+	trpG	SO3020	0.79	-2.3
3,132,120	-	trpG	SO3020	0.87	-1.4
3,132,121	+	trpG	SO3020	0.87	-0.2
3,132,121	+	trpG	SO3020	0.87	-2.2
3,132,129	-	trpG	SO3020	0.88	-1.3
3,132,129	-	trpG	SO3020	0.88	-3.0
3,132,129	-	trpG	SO3020	0.88	-2.3
3,132,260	-				-4.0
3,132,281	+				-1.8
3,132,288	+				-1.7
3,132,331	+	trpD	SO3021	0.12	-2.1
3,132,331	+	trpD	SO3021	0.12	-1.6
3,132,412	-	trpD	SO3021	0.20	-2.2
3,132,418	-	trpD	SO3021	0.21	-2.2
3,132,419	-	trpD	SO3021	0.21	-2.6
3,132,504	+	trpD	SO3021	0.29	-0.8
3,132,596	-	trpD	SO3021	0.38	+1.8
3,132,625	+	trpD	SO3021	0.41	-2.1
3,132,625	+	trpD	SO3021	0.41	-1.4
3,132,646	+	trpD	SO3021	0.43	+0.5
3,132,646	+	trpD	SO3021	0.43	-2.4
3,132,646	+	trpD	SO3021	0.43	-0.7
3,132,654	-	trpD	SO3021	0.43	+0.8
3,132,654	-	trpD	SO3021	0.43	-3.7
3,132,681	+	trpD	SO3021	0.46	-1.1
3,132,711	+	trpD	SO3021	0.49	-1.7
3,132,775	-	trpD	SO3021	0.55	+0.8
3,132,801	+	trpD	SO3021	0.57	-0.8
3,132,809	-	trpD	SO3021	0.58	-0.6
3,132,811	+	trpD	SO3021	0.58	-2.2
3,132,843	+	trpD	SO3021	0.61	-2.4
3,132,873	+	trpD	SO3021	0.64	+0.3
3,132,932	+	trpD	SO3021	0.70	-1.4
3,133,085	-	trpD	SO3021	0.85	-1.8
3,133,174	-				-0.4
3,133,229	-				-2.4
3,133,230	-				-3.0
3,133,268	+				-2.6
3,133,337	+				-3.9
3,133,337	+				-2.9
3,133,345	-				-1.7
3,133,406	+				-1.0
3,133,407	+				-1.7
3,133,415	-				-0.5
3,133,540	-	trpC/F	SO3022	0.14	-4.1
3,133,540	-	trpC/F	SO3022	0.14	-1.1
3,133,659	+	trpC/F	SO3022	0.23	+1.3
3,133,766	+	trpC/F	SO3022	0.30	-2.6
3,133,945	+	trpC/F	SO3022	0.43	-0.3
3,134,058	+	trpC/F	SO3022	0.51	-1.3
3,134,139	+	trpC/F	SO3022	0.57	-0.5