Strain Fitness in Shewanella oneidensis MR-1 around SO3019

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,128,869	-		SO3017	0.28	+0.9
3,128,891	-		SO3017	0.31	+0.4
3,128,902	+		SO3017	0.32	-0.5
3,128,902	+		SO3017	0.32	+0.0
3,128,902	+		SO3017	0.32	+0.8
3,128,910	-		SO3017	0.33	+0.8
3,128,937	+		SO3017	0.36	-0.8
3,128,984	+		SO3017	0.42	+0.2
3,129,005	+		SO3017	0.44	-1.9
3,129,047	-		SO3017	0.49	+1.4
3,129,073	+		SO3017	0.52	-1.4
3,129,119	+		SO3017	0.57	-1.0
3,129,177	+		SO3017	0.64	-1.1
3,129,197	-		SO3017	0.66	+1.2
3,129,222	+		SO3017	0.69	+0.8
3,129,230	-		SO3017	0.70	+0.7
3,129,267	-		SO3017	0.74	+0.7
3,129,337	+		SO3017	0.83	+1.3
3,129,488	+				+1.5
3,129,686	-				-2.4
3,129,714	+				-3.7
3,129,740	+				-1.4
3,129,741	-				-1.2
3,129,748	-				-1.9
3,129,748	-				-0.9
3,129,913	+				-1.5
3,130,075	-	trpE	SO3019	0.13	-2.6
3,130,113	+	trpE	SO3019	0.15	-2.2
3,130,215	+	trpE	SO3019	0.21	-2.0
3,130,215	+	trpE	SO3019	0.21	-1.6
3,130,223	-	trpE	SO3019	0.21	-0.2
3,130,223	-	trpE	SO3019	0.21	-0.6
3,130,320	+	trpE	SO3019	0.27	-2.3
3,130,360	-	trpE	SO3019	0.29	+0.7
3,130,557	-	trpE	SO3019	0.41	-1.5
3,130,569	-	trpE	SO3019	0.41	-2.6
3,130,621	-	trpE	SO3019	0.44	-2.3
3,130,653	-	trpE	SO3019	0.46	-2.0
3,130,774	+	trpE	SO3019	0.53	-1.3
3,130,774	+	trpE	SO3019	0.53	-2.1
3,130,774	+	trpE	SO3019	0.53	-0.3
3,130,774	+	trpE	SO3019	0.53	-0.3
3,130,782	-	trpE	SO3019	0.54	-0.3
3,130,782	-	trpE	SO3019	0.54	-2.7
3,130,782	-	trpE	SO3019	0.54	-1.7
3,130,783	+	trpE	SO3019	0.54	-1.8
3,130,806	-	trpE	SO3019	0.55	-1.1
3,130,877	+	trpE	SO3019	0.59	-0.2
3,130,936	-	trpE	SO3019	0.62	-1.4
3,131,061	-	trpE	SO3019	0.70	-1.8
3,131,063	+	trpE	SO3019	0.70	-2.7
3,131,110	+	trpE	SO3019	0.73	-2.2
3,131,118	-	trpE	SO3019	0.73	-0.7
3,131,197	+	trpE	SO3019	0.78	-1.1
3,131,217	+	trpE	SO3019	0.79	-1.6
3,131,225	-	trpE	SO3019	0.79	-2.5
3,131,225	-	trpE	SO3019	0.79	+1.3
3,131,225	-	trpE	SO3019	0.79	-0.4
3,131,343	-	trpE	SO3019	0.86	-4.2
3,131,403	-	trpE	SO3019	0.90	-0.6
3,131,403	-	trpE	SO3019	0.90	-3.3
3,131,408	-	trpE	SO3019	0.90	-1.8
3,131,408	-	trpE	SO3019	0.90	-1.3
3,131,414	-				-2.4
3,131,416	+				-2.1
3,131,435	-				-1.9
3,131,511	+				-0.7
3,131,519	-				-2.9
3,131,555	+				-2.0
3,131,576	+				-1.9
3,131,584	-				-1.6
3,131,743	+	trpG	SO3020	0.25	-1.8
3,131,743	+	trpG	SO3020	0.25	-0.6
3,131,751	-	trpG	SO3020	0.26	-1.2
3,131,770	-	trpG	SO3020	0.29	-3.3
3,132,075	+	trpG	SO3020	0.79	-2.3
3,132,120	-	trpG	SO3020	0.87	-1.4
3,132,121	+	trpG	SO3020	0.87	-0.2
3,132,121	+	trpG	SO3020	0.87	-2.2
3,132,129	-	trpG	SO3020	0.88	-1.3
3,132,129	-	trpG	SO3020	0.88	-3.0
3,132,129	-	trpG	SO3020	0.88	-2.3
3,132,260	-				-4.0
3,132,281	+				-1.8
3,132,288	+				-1.7
3,132,331	+	trpD	SO3021	0.12	-2.1
3,132,331	+	trpD	SO3021	0.12	-1.6
3,132,412	-	trpD	SO3021	0.20	-2.2
3,132,418	-	trpD	SO3021	0.21	-2.2
3,132,419	-	trpD	SO3021	0.21	-2.6
3,132,504	+	trpD	SO3021	0.29	-0.8