Strain Fitness in Shewanella oneidensis MR-1 around SO2964

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,096,975	-		SO2963	0.19	-0.9
3,096,985	-		SO2963	0.20	-0.7
3,096,994	-		SO2963	0.20	+0.6
3,097,118	+		SO2963	0.31	-0.9
3,097,163	-		SO2963	0.35	+0.6
3,097,196	-		SO2963	0.37	-0.4
3,097,271	+		SO2963	0.44	+1.2
3,097,279	-		SO2963	0.44	+0.7
3,097,279	-		SO2963	0.44	+1.0
3,097,351	+		SO2963	0.50	-0.1
3,097,356	+		SO2963	0.51	-0.5
3,097,366	+		SO2963	0.52	-1.2
3,097,379	-		SO2963	0.53	-0.8
3,097,411	-		SO2963	0.55	-0.9
3,097,411	-		SO2963	0.55	+0.8
3,097,565	+		SO2963	0.68	+0.6
3,097,565	+		SO2963	0.68	-0.1
3,097,674	+				+0.3
3,097,713	-		SO2963	0.81	+1.1
3,097,725	+		SO2963	0.82	+0.4
3,097,725	+		SO2963	0.82	+1.3
3,097,785	-		SO2963	0.87	+0.1
3,097,841	-				+0.1
3,098,349	-		SO2964	0.46	+0.4
3,098,402	+		SO2964	0.52	+1.9
3,098,485	+		SO2964	0.62	+0.5
3,098,543	-		SO2964	0.69	-2.1
3,098,618	+		SO2964	0.78	+0.1
3,098,618	+		SO2964	0.78	-0.3
3,098,618	+		SO2964	0.78	+2.2
3,098,626	-		SO2964	0.78	+1.5
3,098,626	-		SO2964	0.78	-1.8
3,098,626	-		SO2964	0.78	+0.1
3,098,626	-		SO2964	0.78	+0.1
3,098,626	-		SO2964	0.78	+0.2
3,098,646	-		SO2964	0.81	-0.2
3,098,743	+				+0.8
3,098,743	+				-0.4
3,098,805	+				+0.2
3,098,899	+				+0.5
3,098,899	+				-2.0
3,098,972	+		SO2965	0.12	-0.9
3,098,974	+		SO2965	0.12	+1.3
3,099,017	-		SO2965	0.15	+2.1
3,099,057	+		SO2965	0.18	+2.2
3,099,057	+		SO2965	0.18	-1.0
3,099,059	+		SO2965	0.18	-1.3
3,099,065	-		SO2965	0.19	+0.9
3,099,088	+		SO2965	0.21	+1.0
3,099,096	-		SO2965	0.21	-0.3
3,099,103	+		SO2965	0.22	+0.8
3,099,103	+		SO2965	0.22	+0.7
3,099,111	-		SO2965	0.22	+1.0
3,099,111	-		SO2965	0.22	-1.6
3,099,111	-		SO2965	0.22	+0.5
3,099,148	+		SO2965	0.25	-1.4
3,099,156	-		SO2965	0.26	-1.6
3,099,200	-		SO2965	0.29	+0.6
3,099,259	+		SO2965	0.34	-1.6
3,099,327	-		SO2965	0.39	+0.2
3,099,337	+		SO2965	0.40	+0.3
3,099,517	+		SO2965	0.54	-1.0
3,099,533	-		SO2965	0.55	+1.5
3,099,670	-		SO2965	0.66	+0.1
3,099,759	+		SO2965	0.72	+0.7
3,099,809	-		SO2965	0.76	-0.2