Strain Fitness in Shewanella oneidensis MR-1 around SO2920

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,050,755	-				-0.2
3,050,837	+				-1.6
3,050,840	-				-0.2
3,050,971	+		SO2919	0.17	+1.2
3,050,971	+		SO2919	0.17	+1.7
3,050,971	+		SO2919	0.17	+0.1
3,050,979	-		SO2919	0.18	-1.7
3,050,979	-		SO2919	0.18	-1.4
3,050,979	-		SO2919	0.18	+0.0
3,050,979	-		SO2919	0.18	+1.3
3,050,989	-		SO2919	0.19	-2.2
3,050,989	-		SO2919	0.19	+0.4
3,050,989	-		SO2919	0.19	-0.7
3,050,989	-		SO2919	0.19	+0.0
3,050,989	-		SO2919	0.19	-0.6
3,051,039	-		SO2919	0.24	+0.3
3,051,106	-		SO2919	0.31	-0.5
3,051,176	-		SO2919	0.39	-0.1
3,051,262	-		SO2919	0.49	+0.7
3,051,284	+		SO2919	0.51	-0.6
3,051,441	-		SO2919	0.68	-0.6
3,051,573	+		SO2919	0.83	-1.3
3,051,624	+		SO2919	0.88	-0.1
3,051,645	+				-0.3
3,051,647	+				-0.9
3,051,657	-				-0.0
3,051,789	+				+1.3
3,051,985	-		SO2920	0.22	+0.7
3,052,040	+		SO2920	0.27	-2.0
3,052,190	+		SO2920	0.41	+0.6
3,052,196	+		SO2920	0.41	+0.8
3,052,201	+		SO2920	0.42	+0.7
3,052,201	+		SO2920	0.42	-0.7
3,052,201	+		SO2920	0.42	+1.1
3,052,225	+		SO2920	0.44	+2.5
3,052,259	-		SO2920	0.47	+1.1
3,052,431	-		SO2920	0.63	+1.2
3,052,431	-		SO2920	0.63	-0.9
3,052,456	+		SO2920	0.65	-2.1
3,052,600	-		SO2920	0.78	-0.5
3,052,724	+		SO2920	0.89	+0.7
3,052,732	-		SO2920	0.90	+0.3
3,052,835	-				-0.5
3,052,976	+				+0.4
3,053,189	+	folX	SO2921	0.67	-1.8
3,053,189	+	folX	SO2921	0.67	-1.0
3,053,190	-	folX	SO2921	0.67	-0.3
3,053,190	-	folX	SO2921	0.67	-0.3
3,053,190	-	folX	SO2921	0.67	-1.5
3,053,221	-	folX	SO2921	0.76	+0.7
3,053,292	-				+1.0
3,053,385	-				+1.3
3,053,469	+				+0.1
3,053,488	-		SO2922	0.11	+0.6
3,053,527	+		SO2922	0.15	-0.1
3,053,537	+		SO2922	0.16	+0.8
3,053,595	+		SO2922	0.23	-0.1
3,053,618	-		SO2922	0.25	+0.8
3,053,663	+		SO2922	0.30	+1.5