Strain Fitness in Shewanella oneidensis MR-1 around SO2760

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,881,859	+				-2.1
2,881,867	-				-1.2
2,881,867	-				+0.9
2,881,873	+				-0.7
2,881,873	+				+0.0
2,881,873	+				-1.0
2,881,873	+				+0.7
2,881,881	-				+1.4
2,881,881	-				-2.1
2,881,881	-				-1.1
2,881,881	-				-1.1
2,881,914	+	upp	SO2759	0.14	-1.0
2,881,914	+	upp	SO2759	0.14	-1.1
2,881,914	+	upp	SO2759	0.14	-2.0
2,881,969	-	upp	SO2759	0.23	-2.0
2,882,125	+	upp	SO2759	0.48	-1.4
2,882,133	-	upp	SO2759	0.49	-0.6
2,882,133	-	upp	SO2759	0.49	-1.1
2,882,133	-	upp	SO2759	0.49	+1.2
2,882,133	-	upp	SO2759	0.49	-2.8
2,882,207	+	upp	SO2759	0.61	-0.4
2,882,215	-	upp	SO2759	0.62	-0.8
2,882,250	+	upp	SO2759	0.68	-1.1
2,882,392	-				+1.0
2,882,439	-				-0.8
2,882,640	-				-0.1
2,882,787	+				-1.6
2,882,803	-				+0.0
2,882,854	+				-1.3
2,882,862	-				-1.4
2,882,883	+	purM	SO2760	0.12	-2.3
2,882,976	+	purM	SO2760	0.20	-0.1
2,883,151	-	purM	SO2760	0.37	-0.4
2,883,244	-	purM	SO2760	0.46	-1.7
2,883,244	-	purM	SO2760	0.46	-0.4
2,883,507	-	purM	SO2760	0.71	-1.8
2,883,666	+	purM	SO2760	0.86	+1.0
2,883,731	-				-0.9
2,883,962	-	purN	SO2761	0.22	-0.1
2,884,223	+	purN	SO2761	0.63	-2.9
2,884,357	-	purN	SO2761	0.84	-1.7
2,884,493	-				-0.3
2,884,583	+				+0.7
2,884,630	+				-0.9
2,884,630	+				+0.2
2,884,630	+				+0.1
2,884,630	+				+1.3
2,884,645	+				-0.1
2,884,746	+		SO2762	0.19	-0.4
2,884,810	-		SO2762	0.28	+1.4