Strain Fitness in Shewanella oneidensis MR-1 around SO2587

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,713,578	-				-1.1
2,713,587	-				+0.6
2,713,627	+				+0.8
2,713,627	+				+0.2
2,713,635	-				-0.3
2,713,686	+				-0.5
2,713,694	-				+1.1
2,713,694	-				+0.8
2,713,765	-				-0.6
2,713,866	-				-0.9
2,713,959	-	hemB-1	SO2587	0.17	-0.7
2,714,021	+	hemB-1	SO2587	0.23	-1.2
2,714,039	+	hemB-1	SO2587	0.25	-1.1
2,714,047	-	hemB-1	SO2587	0.25	+1.5
2,714,334	-	hemB-1	SO2587	0.54	+0.1
2,714,348	-	hemB-1	SO2587	0.55	+2.6
2,714,511	-	hemB-1	SO2587	0.72	-0.4
2,714,673	+	hemB-1	SO2587	0.88	+0.8
2,714,673	+	hemB-1	SO2587	0.88	+1.2
2,714,746	+				-0.5
2,714,801	+				-0.5
2,714,852	-				+0.6
2,715,549	+				-0.1
2,715,794	-		SO2588	0.32	-1.1