Strain Fitness in Shewanella oneidensis MR-1 around SO2458

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,573,366	-		SO2457	0.15	-0.7
2,573,460	-		SO2457	0.47	-1.1
2,573,556	+		SO2457	0.80	-0.5
2,573,564	-		SO2457	0.83	+1.0
2,573,712	+				+0.3
2,573,993	-				+0.6
2,574,029	+				+0.6
2,574,153	+				+2.6
2,574,161	-				-1.6
2,574,221	-				+0.8
2,574,441	+		SO2458	0.12	+2.1
2,574,479	+		SO2458	0.14	+1.1
2,574,479	+		SO2458	0.14	-0.1
2,574,487	-		SO2458	0.15	-2.4
2,574,618	-		SO2458	0.23	+0.4
2,574,736	-		SO2458	0.31	+1.6
2,574,773	+		SO2458	0.33	+1.2
2,574,773	+		SO2458	0.33	-0.7
2,574,773	+		SO2458	0.33	+1.2
2,574,780	+		SO2458	0.33	+0.3
2,574,781	-		SO2458	0.33	-1.9
2,574,781	-		SO2458	0.33	+0.8
2,574,781	-		SO2458	0.33	+0.1
2,574,781	-		SO2458	0.33	-1.4
2,574,785	+		SO2458	0.34	+1.0
2,574,820	+		SO2458	0.36	+0.5
2,574,895	-		SO2458	0.41	+0.6
2,574,912	-		SO2458	0.42	+0.8
2,575,054	-		SO2458	0.51	-0.0
2,575,106	+		SO2458	0.54	+1.6
2,575,161	+		SO2458	0.57	-0.8
2,575,193	+		SO2458	0.59	-0.2
2,575,195	+		SO2458	0.59	+0.9
2,575,203	-		SO2458	0.60	+0.7
2,575,205	+		SO2458	0.60	-0.2
2,575,311	-		SO2458	0.67	-0.4
2,575,352	+		SO2458	0.69	+0.3
2,575,358	+		SO2458	0.70	+0.8
2,575,365	-		SO2458	0.70	+0.2
2,575,372	-		SO2458	0.71	+0.6
2,575,405	-		SO2458	0.73	-1.7
2,575,557	-		SO2458	0.82	+0.9
2,575,757	-				-1.3
2,575,775	+				-0.1
2,575,996	-				-0.1
2,575,998	+				+2.1
2,576,009	+				+2.4
2,576,017	-				-1.1
2,576,322	+	cga	SO2459	0.14	-1.6
2,576,382	+	cga	SO2459	0.16	-1.7
2,576,382	+	cga	SO2459	0.16	+0.1
2,576,443	+	cga	SO2459	0.18	-1.1
2,576,607	+	cga	SO2459	0.25	+1.7
2,576,617	+	cga	SO2459	0.25	+1.4
2,576,833	+	cga	SO2459	0.34	+0.5
2,576,833	+	cga	SO2459	0.34	-0.7