Strain Fitness in Shewanella oneidensis MR-1 around SO2454

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,569,640	-				-1.2
2,569,640	-				-0.0
2,569,699	+		SO2453	0.15	+1.0
2,569,714	+		SO2453	0.16	-0.0
2,569,719	+		SO2453	0.17	-0.5
2,569,722	-		SO2453	0.17	-1.3
2,569,727	-		SO2453	0.17	-0.1
2,569,942	+		SO2453	0.37	-0.2
2,569,979	+		SO2453	0.40	+1.6
2,569,979	+		SO2453	0.40	+0.8
2,569,979	+		SO2453	0.40	+0.8
2,569,979	+		SO2453	0.40	+0.1
2,569,979	+		SO2453	0.40	+0.6
2,569,987	-		SO2453	0.41	+0.1
2,570,099	-		SO2453	0.51	+0.3
2,570,255	-		SO2453	0.66	-0.9
2,570,296	+		SO2453	0.70	-1.4
2,570,370	-		SO2453	0.76	-0.3
2,570,515	+		SO2453	0.90	+0.1
2,570,536	+				+0.1
2,570,608	+				+0.1
2,570,633	+				+0.5
2,570,697	-				+0.3
2,570,910	+		SO2454	0.25	-1.0
2,570,989	-		SO2454	0.32	+1.1
2,571,054	+		SO2454	0.38	+0.9
2,571,293	-		SO2454	0.60	+0.8
2,571,305	+		SO2454	0.61	+0.6
2,571,452	+		SO2454	0.74	+1.1
2,571,478	+		SO2454	0.77	+1.4
2,571,497	-		SO2454	0.78	-0.1
2,571,505	-		SO2454	0.79	+2.5
2,571,521	+		SO2454	0.81	+0.7
2,571,536	-		SO2454	0.82	+1.9
2,571,597	+		SO2454	0.88	-0.7
2,571,600	+		SO2454	0.88	-0.7
2,571,638	-				-0.3
2,571,773	+				+0.8
2,571,878	+				-0.6
2,571,883	+				+0.7
2,571,883	+				-1.3
2,571,883	+				-0.8
2,572,003	-		SO2455	0.15	-1.3
2,572,249	-		SO2455	0.43	+0.5
2,572,477	+		SO2455	0.68	+1.2
2,572,490	+		SO2455	0.70	+1.4
2,572,589	+		SO2455	0.81	-1.8
2,572,626	+		SO2455	0.85	-1.5
2,572,653	-		SO2455	0.88	-2.4
2,572,658	-		SO2455	0.89	-1.0
2,572,674	+				+0.7