Strain Fitness in Shewanella oneidensis MR-1 around SO2445

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,557,552	+	thiDE	SO2444	0.38	-0.8
2,557,555	-	thiDE	SO2444	0.38	-0.2
2,557,676	+	thiDE	SO2444	0.45	+0.0
2,557,690	+	thiDE	SO2444	0.46	-1.7
2,557,723	+	thiDE	SO2444	0.48	-0.6
2,557,729	+	thiDE	SO2444	0.49	-0.8
2,557,742	+	thiDE	SO2444	0.50	-0.9
2,557,760	-	thiDE	SO2444	0.51	+0.0
2,557,770	+	thiDE	SO2444	0.51	-0.4
2,557,778	-	thiDE	SO2444	0.52	-0.4
2,557,782	+	thiDE	SO2444	0.52	-0.1
2,557,790	-	thiDE	SO2444	0.53	-0.4
2,557,794	+	thiDE	SO2444	0.53	-0.7
2,557,874	+	thiDE	SO2444	0.58	-1.2
2,557,874	+	thiDE	SO2444	0.58	-1.4
2,558,275	-	thiDE	SO2444	0.83	+3.1
2,558,316	-	thiDE	SO2444	0.86	+2.1
2,558,535	+				+0.5
2,558,543	-				+0.0
2,558,580	+				-0.6
2,558,613	+				-0.5
2,558,615	-				+0.9
2,558,863	-	thiC	SO2445	0.15	+1.4
2,558,898	-	thiC	SO2445	0.17	-1.0
2,558,905	-	thiC	SO2445	0.17	-0.6
2,559,185	+	thiC	SO2445	0.30	+2.0
2,559,193	-	thiC	SO2445	0.30	-1.7
2,559,193	-	thiC	SO2445	0.30	-1.4
2,559,278	-	thiC	SO2445	0.34	-0.1
2,559,302	-	thiC	SO2445	0.35	-0.2
2,559,362	+	thiC	SO2445	0.38	-1.1
2,559,408	+	thiC	SO2445	0.40	-1.4
2,559,578	+	thiC	SO2445	0.48	-2.6
2,559,870	-	thiC	SO2445	0.62	-0.7
2,559,992	-	thiC	SO2445	0.67	-1.1
2,560,056	-	thiC	SO2445	0.70	-1.8
2,560,207	-	thiC	SO2445	0.77	-0.6
2,560,379	-	thiC	SO2445	0.85	-1.3
2,560,430	-	thiC	SO2445	0.87	+0.0
2,560,439	+	thiC	SO2445	0.88	+0.4
2,560,502	-				+1.6
2,560,614	+				+0.2
2,560,687	+				+2.4
2,560,687	+				+0.4
2,560,687	+				-0.2
2,560,687	+				-0.3
2,560,695	-				+0.1
2,560,750	+				+0.9
2,560,829	-				-0.7
2,560,937	+				+0.9
2,560,967	+				+0.8
2,561,166	+				-0.5
2,561,174	-				-0.9
2,561,246	-		SO2446	0.10	-0.1
2,561,251	-		SO2446	0.11	+0.5
2,561,343	+		SO2446	0.19	+0.7
2,561,367	+		SO2446	0.21	-0.3
2,561,402	+		SO2446	0.25	-0.4
2,561,553	+		SO2446	0.39	+0.6
2,561,553	+		SO2446	0.39	+0.2
2,561,553	+		SO2446	0.39	+1.7
2,561,553	+		SO2446	0.39	+0.8
2,561,553	+		SO2446	0.39	+0.7
2,561,553	+				+0.8