Strain Fitness in Shewanella oneidensis MR-1 around SO2442

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,554,866	+	thiH	SO2440	0.80	-0.8
2,554,866	+	thiH	SO2440	0.80	-1.4
2,554,874	-	thiH	SO2440	0.80	-1.3
2,554,874	-	thiH	SO2440	0.80	+0.9
2,554,874	-	thiH	SO2440	0.80	-0.3
2,554,914	+	thiH	SO2440	0.84	+0.5
2,555,122	+				+1.5
2,555,122	+				-0.6
2,555,147	+				+0.2
2,555,156	-				-0.7
2,555,243	+	thiG	SO2441	0.20	-0.7
2,555,243	+	thiG	SO2441	0.20	+1.0
2,555,251	-	thiG	SO2441	0.21	-0.7
2,555,410	+	thiG	SO2441	0.42	+0.7
2,555,433	-	thiG	SO2441	0.45	-0.4
2,555,489	-	thiG	SO2441	0.52	+0.9
2,555,522	-	thiG	SO2441	0.56	+1.1
2,555,563	+	thiG	SO2441	0.62	-1.9
2,555,580	+	thiG	SO2441	0.64	-0.1
2,555,855	+				-0.1
2,555,919	-	thiS	SO2442	0.30	-1.8
2,556,483	+	thiF	SO2443	0.47	-0.2
2,556,680	+	thiF	SO2443	0.69	-0.9
2,556,680	+	thiF	SO2443	0.69	+0.6
2,556,680	+	thiF	SO2443	0.69	-2.4
2,556,738	+	thiF	SO2443	0.75	-0.5
2,556,738	+	thiF	SO2443	0.75	+0.1
2,556,918	-				-1.6
2,556,971	-				-0.6