Strain Fitness in Shewanella oneidensis MR-1 around SO2420

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,527,959	-		SO2419	0.59	-0.1
2,528,009	+		SO2419	0.62	+1.4
2,528,065	+		SO2419	0.64	-0.9
2,528,320	-		SO2419	0.77	-1.0
2,528,392	-		SO2419	0.81	-0.5
2,528,750	+				-1.4
2,528,816	+				-0.7
2,528,923	-				+1.1
2,528,939	-				+2.3
2,529,018	+				-0.0
2,529,076	-				+1.1
2,529,105	+				+1.3
2,529,267	+	sppA	SO2420	0.17	+0.5
2,529,457	-	sppA	SO2420	0.28	+0.2
2,529,504	-	sppA	SO2420	0.30	+2.3
2,529,610	+	sppA	SO2420	0.36	+1.5
2,529,956	-	sppA	SO2420	0.55	+0.3
2,529,956	-	sppA	SO2420	0.55	-1.0
2,530,137	-	sppA	SO2420	0.64	-1.5
2,530,199	+	sppA	SO2420	0.68	-0.1
2,530,253	-	sppA	SO2420	0.71	-0.1
2,530,323	+	sppA	SO2420	0.75	+0.7
2,530,926	+				+1.1
2,531,018	-	ansA	SO2421	0.11	+0.8
2,531,079	-	ansA	SO2421	0.17	-1.2
2,531,215	-	ansA	SO2421	0.31	-1.9
2,531,298	+	ansA	SO2421	0.39	-1.0
2,531,298	+	ansA	SO2421	0.39	-1.2
2,531,540	-	ansA	SO2421	0.63	-2.9
2,531,632	-	ansA	SO2421	0.72	-1.1