Strain Fitness in Shewanella oneidensis MR-1 around SO2229

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,344,843	+				+0.4
2,344,864	-				-2.6
2,344,898	+				+0.9
2,344,989	-				-1.0
2,345,079	-				-1.5
2,345,107	-				+0.4
2,345,317	+		SO2228	0.48	+0.0
2,345,324	+		SO2228	0.50	+0.6
2,345,358	+		SO2228	0.58	-0.5
2,345,377	-		SO2228	0.63	-0.1
2,345,481	+		SO2228	0.88	+0.6
2,345,526	+				-1.0
2,345,573	+				-0.4
2,345,573	+				+1.2
2,345,745	+				+1.9
2,345,802	+				-0.3
2,345,802	+				-2.1
2,345,810	-				+0.1
2,345,877	+				-0.0
2,345,955	+				+0.6
2,345,968	-				-1.2
2,345,992	-				-0.9
2,346,061	-	hrpA	SO2229	0.11	+0.3
2,346,100	+	hrpA	SO2229	0.12	-1.4
2,346,115	-	hrpA	SO2229	0.12	-0.5
2,346,115	-	hrpA	SO2229	0.12	+1.7
2,346,115	-	hrpA	SO2229	0.12	-1.8
2,346,132	+	hrpA	SO2229	0.12	-1.4
2,346,138	+	hrpA	SO2229	0.13	-0.5
2,346,621	+	hrpA	SO2229	0.25	-1.7
2,346,629	-	hrpA	SO2229	0.25	-2.9
2,346,629	-	hrpA	SO2229	0.25	+0.3
2,346,735	+	hrpA	SO2229	0.28	+0.1
2,346,745	+	hrpA	SO2229	0.28	+0.8
2,346,758	-	hrpA	SO2229	0.29	+0.5
2,346,818	-	hrpA	SO2229	0.30	-0.8
2,346,907	-	hrpA	SO2229	0.32	-0.2
2,347,129	+	hrpA	SO2229	0.38	-1.4
2,347,199	+	hrpA	SO2229	0.40	-0.9
2,347,199	+	hrpA	SO2229	0.40	-0.7
2,347,207	-	hrpA	SO2229	0.40	-1.7
2,347,315	-	hrpA	SO2229	0.43	-0.9
2,347,321	-	hrpA	SO2229	0.43	-0.5
2,347,452	-	hrpA	SO2229	0.46	-1.0
2,347,454	+	hrpA	SO2229	0.47	-1.6
2,347,462	-	hrpA	SO2229	0.47	-1.1
2,347,500	+	hrpA	SO2229	0.48	-1.8
2,347,520	-	hrpA	SO2229	0.48	-0.3
2,347,522	+	hrpA	SO2229	0.48	-0.1
2,347,658	+	hrpA	SO2229	0.52	-1.2
2,347,658	+	hrpA	SO2229	0.52	-0.4
2,347,658	-	hrpA	SO2229	0.52	-2.4
2,347,666	-	hrpA	SO2229	0.52	+0.5
2,347,666	-	hrpA	SO2229	0.52	-0.8
2,347,765	+	hrpA	SO2229	0.55	-0.5
2,347,765	+	hrpA	SO2229	0.55	-1.2
2,347,765	+	hrpA	SO2229	0.55	-1.7
2,347,783	-	hrpA	SO2229	0.55	+0.5
2,348,137	+	hrpA	SO2229	0.64	+0.6
2,348,183	-	hrpA	SO2229	0.65	+0.4
2,348,349	+	hrpA	SO2229	0.70	-0.9
2,348,576	-	hrpA	SO2229	0.75	+0.1
2,348,724	+	hrpA	SO2229	0.79	+0.1
2,348,724	+	hrpA	SO2229	0.79	-1.1
2,348,732	-	hrpA	SO2229	0.79	+0.9
2,348,831	+	hrpA	SO2229	0.82	-0.6
2,348,896	+	hrpA	SO2229	0.84	-0.7
2,348,972	-	hrpA	SO2229	0.86	-1.5
2,349,018	-	hrpA	SO2229	0.87	-1.4
2,349,045	+	hrpA	SO2229	0.88	-1.1
2,349,045	+	hrpA	SO2229	0.88	-0.9
2,349,074	-	hrpA	SO2229	0.88	-1.3
2,349,089	+	hrpA	SO2229	0.89	+0.0
2,349,274	-				-2.9
2,349,404	-				-1.0
2,349,537	+				-0.8
2,349,570	-				-0.6
2,349,575	-				+1.1
2,349,649	+				-1.1
2,349,867	-				-1.6
2,349,877	-				+1.4
2,349,985	+				-0.9
2,349,993	-				-0.1
2,349,993	-				-0.9
2,349,993	-				-2.3
2,349,993	-				-0.2
2,350,033	+				-0.5
2,350,041	-				+1.1
2,350,156	+		SO2232	0.30	-0.9
2,350,453	-		SO2232.1	0.33	-1.0