Strain Fitness in Shewanella oneidensis MR-1 around SO2178

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,288,563	+		SO2177	0.24	-0.7
2,288,595	+		SO2177	0.27	+1.5
2,288,838	+		SO2177	0.50	-0.7
2,288,915	+		SO2177	0.58	+0.7
2,288,917	+		SO2177	0.58	+0.4
2,289,041	-		SO2177	0.70	-1.4
2,289,393	-				+0.7
2,289,635	+	ccpA	SO2178	0.19	-0.9
2,289,675	-	ccpA	SO2178	0.23	+0.6
2,289,680	-	ccpA	SO2178	0.23	+0.4
2,289,750	-	ccpA	SO2178	0.30	-1.1
2,289,760	-	ccpA	SO2178	0.31	-1.3
2,289,768	-	ccpA	SO2178	0.32	+0.1
2,289,795	+	ccpA	SO2178	0.35	+0.1
2,289,838	+	ccpA	SO2178	0.39	+0.5
2,289,841	-	ccpA	SO2178	0.40	+0.7
2,289,874	-	ccpA	SO2178	0.43	-1.4
2,290,046	-	ccpA	SO2178	0.60	-0.4
2,290,136	+	ccpA	SO2178	0.69	+0.1
2,290,186	+	ccpA	SO2178	0.74	+0.7
2,290,222	+	ccpA	SO2178	0.78	-0.8
2,290,640	-				+1.4
2,290,757	+				-0.6
2,291,081	+		SO2179	0.12	+0.3
2,291,129	+		SO2179	0.18	+1.8
2,291,437	-		SO2179	0.53	-0.7
2,291,437	-		SO2179	0.53	-1.9