Strain Fitness in Shewanella oneidensis MR-1 around SO2151

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,264,605	+		SO2150	0.55	-1.9
2,264,613	-		SO2150	0.55	-0.2
2,264,677	+		SO2150	0.58	+0.6
2,264,771	+		SO2150	0.62	+0.4
2,264,779	-		SO2150	0.63	-0.6
2,264,782	+		SO2150	0.63	-0.1
2,264,790	-		SO2150	0.63	-0.9
2,264,884	-		SO2150	0.68	-0.8
2,264,884	-		SO2150	0.68	-1.5
2,264,906	-		SO2150	0.69	+1.0
2,264,926	+		SO2150	0.69	+1.2
2,264,926	+		SO2150	0.69	-0.5
2,264,970	+		SO2150	0.71	-0.1
2,265,037	+		SO2150	0.75	-0.8
2,265,041	+		SO2150	0.75	-1.0
2,265,256	+		SO2150	0.84	-1.0
2,265,298	-		SO2150	0.86	-1.5
2,265,305	-		SO2150	0.87	-0.7
2,265,375	+		SO2150	0.90	+1.7
2,265,383	-				+0.7
2,265,384	+				+0.4
2,265,392	-				-0.6
2,265,509	+				-0.2
2,265,520	-				+0.4
2,265,585	-				-0.9
2,265,717	+		SO2151	0.12	-0.6
2,265,717	+		SO2151	0.12	-1.7
2,265,902	-		SO2151	0.30	+0.1
2,265,927	+		SO2151	0.32	+0.1
2,265,927	+		SO2151	0.32	+1.0
2,265,935	-		SO2151	0.33	-0.6
2,265,935	-		SO2151	0.33	-0.9
2,265,935	-		SO2151	0.33	+0.4
2,265,935	-		SO2151	0.33	+1.7
2,265,935	-		SO2151	0.33	-0.8
2,265,945	-		SO2151	0.34	+0.0
2,265,945	-		SO2151	0.34	-1.9
2,265,946	-		SO2151	0.34	-2.2
2,266,021	+		SO2151	0.41	-1.4
2,266,063	-		SO2151	0.45	-2.3
2,266,120	-		SO2151	0.51	-0.6
2,266,199	-		SO2151	0.58	-1.8
2,266,269	-		SO2151	0.65	-1.6
2,266,272	+		SO2151	0.65	-0.3
2,266,346	+		SO2151	0.72	+0.9
2,266,359	-		SO2151	0.74	-1.3
2,266,359	-		SO2151	0.74	+1.2
2,266,359	-		SO2151	0.74	+1.1
2,266,593	-				-0.6
2,266,611	-				-0.9
2,266,611	-				+1.5
2,266,615	+				+0.6
2,266,615	+				+1.0
2,266,620	+				-0.2
2,266,623	-				-0.3
2,266,623	-				-2.2
2,266,623	-				+1.4
2,266,623	-				-0.7
2,266,929	+	moxR	SO2153	0.22	-1.9
2,266,937	-	moxR	SO2153	0.22	+0.8
2,267,046	+	moxR	SO2153	0.34	+0.8
2,267,046	+	moxR	SO2153	0.34	-0.1
2,267,093	+	moxR	SO2153	0.40	-1.3
2,267,307	+	moxR	SO2153	0.63	-1.5
2,267,430	+	moxR	SO2153	0.77	-0.1
2,267,430	+	moxR	SO2153	0.77	+0.3
2,267,430	+	moxR	SO2153	0.77	+0.0
2,267,474	-	moxR	SO2153	0.81	-0.2
2,267,474	-	moxR	SO2153	0.81	+0.7
2,267,486	-	moxR	SO2153	0.83	+0.5
2,267,557	+				+0.7
2,267,565	-				+0.4