Strain Fitness in Shewanella oneidensis MR-1 around SO2129

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,234,773	+				+0.1
2,234,832	-		SO2128	0.18	-1.7
2,234,854	-		SO2128	0.28	+0.2
2,234,865	+		SO2128	0.33	-1.1
2,234,873	-		SO2128	0.36	+0.1
2,235,441	+				+1.2
2,235,441	+				-0.9
2,235,482	+				+0.2
2,235,535	+				-0.7
2,235,564	-				+3.3
2,235,581	+				+3.1
2,235,604	+				+0.4
2,235,670	-				+0.7
2,235,791	-				+1.0
2,235,837	+				+0.1
2,235,839	-				-1.1
2,235,840	-				+0.9
2,235,871	-		SO2129	0.12	-0.1
2,235,944	+		SO2129	0.19	+1.9
2,235,952	-		SO2129	0.20	-1.0
2,235,952	-		SO2129	0.20	-0.5
2,236,079	-		SO2129	0.31	+1.3
2,236,079	-		SO2129	0.31	-0.5
2,236,079	-		SO2129	0.31	-0.6
2,236,089	-		SO2129	0.32	+1.4
2,236,138	+		SO2129	0.36	+1.6
2,236,203	+		SO2129	0.42	+0.7
2,236,264	+		SO2129	0.48	-0.7
2,236,469	-		SO2129	0.66	-0.3
2,236,566	+		SO2129	0.74	-0.8
2,236,691	+		SO2129	0.86	+1.0
2,236,724	+		SO2129	0.89	+0.9
2,236,805	+				-1.2
2,236,861	-				+0.5
2,236,955	+				+0.3
2,236,963	-				-0.7
2,237,028	-				-1.0
2,237,068	+				-0.7
2,237,069	+				-0.9
2,237,071	+				-0.5
2,237,076	+				-0.6
2,237,077	-				+0.8