Strain Fitness in Shewanella oneidensis MR-1 around SO2109

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,207,270	+	mdoH	SO2108	0.67	+0.0
2,207,278	-	mdoH	SO2108	0.67	-1.3
2,207,370	+	mdoH	SO2108	0.72	+0.2
2,207,485	+	mdoH	SO2108	0.77	-0.5
2,207,537	+	mdoH	SO2108	0.79	-0.5
2,207,636	+	mdoH	SO2108	0.84	-3.0
2,207,715	+	mdoH	SO2108	0.87	-1.4
2,207,715	+	mdoH	SO2108	0.87	-1.5
2,207,723	-	mdoH	SO2108	0.88	-0.7
2,207,723	-	mdoH	SO2108	0.88	+0.5
2,208,137	+				+0.2
2,208,158	+				-2.0
2,208,176	+				-0.3
2,208,176	+				+1.5
2,208,176	+				-0.4
2,208,176	+				+1.7
2,208,176	-				-0.4
2,208,184	-				-0.3
2,208,223	+				+0.2
2,208,278	-				-0.1
2,208,438	-		SO2109	0.20	-0.5
2,208,573	+		SO2109	0.29	-0.1
2,208,628	+		SO2109	0.32	+1.6
2,208,628	-		SO2109	0.32	+0.7
2,208,742	-		SO2109	0.40	+1.3
2,208,742	-		SO2109	0.40	-1.1
2,208,764	-		SO2109	0.41	+0.2
2,208,764	-				-0.3
2,208,782	+		SO2109	0.42	-0.8
2,208,888	+		SO2109	0.49	+0.5
2,209,079	+		SO2109	0.62	-0.1
2,209,216	-		SO2109	0.71	+1.0
2,209,225	+		SO2109	0.72	+0.6
2,209,233	-		SO2109	0.72	+0.8
2,209,258	+		SO2109	0.74	+0.8
2,209,282	+		SO2109	0.76	+1.5
2,209,507	-				+1.5
2,209,554	-				+0.5
2,209,601	+				-0.6
2,209,609	-				-0.3
2,209,703	+				-0.4
2,209,789	-				+1.0
2,209,822	-				-1.5
2,209,826	+				-0.0
2,209,835	-		SO2110	0.11	+0.5
2,209,948	+		SO2110	0.32	-2.5
2,209,956	-		SO2110	0.33	-0.0
2,210,024	+		SO2110	0.46	-1.5
2,210,242	+		SO2110	0.85	+0.9
2,210,361	+		SO2111	0.20	+0.7
2,210,471	-		SO2111	0.46	-0.4
2,210,490	+		SO2111	0.50	+0.5